Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.296158	1300006C19Rik	RIKEN cDNA 1300006C19 gene	9		68292
Gene Ontology	biological_process unknown | cellular_component unknown | transferase activity
Human Homolog	SIMP[source of immunodominant MHC-associated peptides]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GGCAACAGGA (5) 4.9 0.0049 P8 Cb GC TCCTGTTTCA (2) 3.3 0.0033 P8 Cb GC CTGAAAGTGA (3) 1.6 0.0016 P8 Cb GC GAATCTGCTC 1.6 0.0016 P8 Cb GC GAGTGGCAGG (3) 1.6 0.0016 P8 Cb GC GCAGCTGCAG (4) 1.6 0.0016 P8 Cb GC TGTTTGTGTT (11) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma AGGGAAATAA (3) 2.3 0.0023 Cb medulloblastoma AGGGAATAAG (4) 2.3 0.0023 Cb medulloblastoma TGTCCTTTAT 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GGCAACAGGA (5) 5.7 0.0057 P8 GC+1d culture CTGAAAGTGA (3) 4.6 0.0046 P8 GC+1d culture GAACTGTAAA (3) 2.3 0.0023 P8 GC+1d culture TTTTTATACC 2.3 0.0023 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TCCTGTTTCA (2) 4.7 0.0047 P8 GC+SHH+1d culture AGGGAAATAA (3) 3.5 0.0035 P8 GC+SHH+1d culture CGTACCTGTC 3.5 0.0035 P8 GC+SHH+1d culture AGGGAATAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture CTGAAAGTGA (3) 2.3 0.0023 P8 GC+SHH+1d culture GGCAACAGGA (5) 2.3 0.0023 P8 GC+SHH+1d culture TGCCAGGGAC (5) 2.3 0.0023 P8 GC+SHH+1d culture GAATCTGCTC 1.2 0.0012 P8 GC+SHH+1d culture GCAGCTGCAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TGTCCTTTAT 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GAATCTGCTC 3.5 0.0035 3T3 fibroblasts TGCCAGGGAC (5) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTGTAGAAGG (2) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GGCAACAGGA (5) 9.1 0.0091 P1 cortex CTGAAAGTGA (3) 4.5 0.0045 P1 cortex TTTTTATACC 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus CTGAAAGTGA (3) 1.8 0.0018 Hypothalamus GAACTGTAAA (3) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TGCCAGGGAC (5) 5.6 0.0056 E12.5 retina AGGGAAATAA (3) 1.9 0.0019 E12.5 retina GAACTGTAAA (3) 1.9 0.0019 E12.5 retina GAATCTGCTC 1.9 0.0019 E12.5 retina GGCAACAGGA (5) 1.9 0.0019 E12.5 retina TGTCCTTTAT 1.9 0.0019 E12.5 retina TTTTTATACC 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AGGGAAATAA (3) 5.5 0.0055 E14.5 retina GGCAACAGGA (5) 5.5 0.0055 E14.5 retina CAGACAGAAA (4) 1.8 0.0018 E14.5 retina GAACTGTAAA (3) 1.8 0.0018 E14.5 retina GAGTGGCAGG (3) 1.8 0.0018 E14.5 retina GCAGCTGCAG (4) 1.8 0.0018 E14.5 retina TCCTGTTTCA (2) 1.8 0.0018 E14.5 retina TTTTTATACC 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TGTCCTTTAT 5.4 0.0054 E16.5 retina GGCAACAGGA (5) 3.6 0.0036 E16.5 retina CAGACAGAAA (4) 1.8 0.0018 E16.5 retina GAGTGGCAGG (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GGCAACAGGA (5) 5.5 0.0055 E18.5 retina AGGGAAATAA (3) 3.6 0.0036 E18.5 retina CGTACCTGTC 1.8 0.0018 E18.5 retina GCAGCTGCAG (4) 1.8 0.0018 E18.5 retina TCCTGTTTCA (2) 1.8 0.0018 E18.5 retina TGTCCTTTAT 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CTGAAAGTGA (3) 5.9 0.0059 P0.5 retina GGCAACAGGA (5) 3.9 0.0039 P0.5 retina AGGGAAATAA (3) 2 0.002 P0.5 retina GAACTGTAAA (3) 2 0.002 P0.5 retina TCCTGTTTCA (2) 2 0.002 P0.5 retina TGTCCTTTAT 2 0.002 P0.5 retina TGTTTGTGTT (11) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina AGGGAAATAA (3) 5.3 0.0053 P2.5 retina TCCTGTTTCA (2) 3.5 0.0035 P2.5 retina TGCCAGGGAC (5) 3.5 0.0035 P2.5 retina CGTACCTGTC 1.8 0.0018 P2.5 retina GAACTGTAAA (3) 1.8 0.0018 P2.5 retina GGCAACAGGA (5) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina AGGGAAATAA (3) 7.9 0.0079 P4.5 retina TGCCAGGGAC (5) 5.9 0.0059 P4.5 retina GGCAACAGGA (5) 4 0.004 P4.5 retina CTGAAAGTGA (3) 2 0.002 P4.5 retina GAACTGTAAA (3) 2 0.002 P4.5 retina GTGTAGAAGG (2) 2 0.002 P4.5 retina TCCTGTTTCA (2) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina CTGAAAGTGA (3) 3.3 0.0033 P6.5 retina GGCAACAGGA (5) 3.3 0.0033 P6.5 retina AGGGAAATAA (3) 1.7 0.0017 P6.5 retina TTTTTATACC 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GGCAACAGGA (5) 5.6 0.0056 P10.5 crx- retina AGGGAAATAA (3) 3.7 0.0037 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GAACTGTAAA (3) 1.9 0.0019 P10.5 crx+ retina GAATCTGCTC 1.9 0.0019 P10.5 crx+ retina GAGTGGCAGG (3) 1.9 0.0019 P10.5 crx+ retina GGCAACAGGA (5) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GGCAACAGGA (5) 5.6 0.0056 Adult retinal CAGACAGAAA (4) 1.9 0.0019 Adult retinal CGTACCTGTC 1.9 0.0019 Adult retinal TGCCAGGGAC (5) 1.9 0.0019 Adult retinal TTTTTATACC 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL CAGACAGAAA (4) 7.7 0.0077 ONL GGCAACAGGA (5) 5.7 0.0057 ONL AGGGAAATAA (3) 1.9 0.0019 ONL TGTTTGTGTT (11) 1.9 0.0019