Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.296158	1300006C19Rik	RIKEN cDNA 1300006C19 gene	9		68292
Gene Ontology	biological_process unknown | cellular_component unknown | transferase activity
Human Homolog	SIMP[source of immunodominant MHC-associated peptides]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGAAAGTGA GAATCTGCTC GAGTGGCAGG (2) GCAGCTGCAG (2) GGCAACAGGA (3) TCCTGTTTCA TGGTTGCTGG TGTTTGTGTT (3) 84.7 0.0847 Cb medulloblastoma AGGGAAATAA (3) AGGGAATAAG TGGTTGCTGG TGTCCTTTAT 120.2 0.1202 P8 GC+1d culture CTGAAAGTGA GAACTGTAAA GGCAACAGGA (3) TGGTTGCTGG TTTTTATACC 72 0.072 P8 GC+SHH+1d culture AGGGAAATAA (3) AGGGAATAAG CGTACCTGTC CTGAAAGTGA GAATCTGCTC GCAGCTGCAG (2) GGCAACAGGA (3) TCCTGTTTCA TGCCAGGGAC TGGTTGCTGG TGTCCTTTAT 113.5 0.1135 3T3 fibroblasts GAATCTGCTC TGCCAGGGAC TGGTTGCTGG 227.8 0.2278 E15 cortex GTGTAGAAGG TGGTTGCTGG 282 0.282 P1 cortex CTGAAAGTGA GGCAACAGGA (3) TGGTTGCTGG TTTTTATACC 104.5 0.1045 Hypothalamus CTGAAAGTGA GAACTGTAAA TGGTTGCTGG 353.2 0.3532 E12.5 retina AGGGAAATAA (3) GAACTGTAAA GAATCTGCTC GGCAACAGGA (3) TGCCAGGGAC TGGTTGCTGG TGTCCTTTAT TTTTTATACC 174.7 0.1747 E14.5 retina AGGGAAATAA (3) CAGACAGAAA GAACTGTAAA GAGTGGCAGG (2) GCAGCTGCAG (2) GGCAACAGGA (3) TCCTGTTTCA TGGTTGCTGG TTTTTATACC 958.3 0.9583 E16.5 retina CAGACAGAAA GAGTGGCAGG (2) GGCAACAGGA (3) TGGTTGCTGG TGTCCTTTAT 780.5 0.7805 E18.5 retina AGGGAAATAA (3) CGTACCTGTC GCAGCTGCAG (2) GGCAACAGGA (3) TCCTGTTTCA TGGTTGCTGG TGTCCTTTAT 269.1 0.2691 P0.5 retina AGGGAAATAA (3) CTGAAAGTGA GAACTGTAAA GGCAACAGGA (3) TCCTGTTTCA TGGTTGCTGG TGTCCTTTAT TGTTTGTGTT (3) 210.2 0.2102 P2.5 retina AGGGAAATAA (3) CGTACCTGTC GAACTGTAAA GGCAACAGGA (3) TCCTGTTTCA TGCCAGGGAC TGGTTGCTGG 183.1 0.1831 P4.5 retina AGGGAAATAA (3) CTGAAAGTGA GAACTGTAAA GGCAACAGGA (3) GTGTAGAAGG TCCTGTTTCA TGCCAGGGAC TGGTTGCTGG 176.4 0.1764 P6.5 retina AGGGAAATAA (3) CTGAAAGTGA GGCAACAGGA (3) TGGTTGCTGG TTTTTATACC 166.7 0.1667 P10.5 crx- retina AGGGAAATAA (3) GGCAACAGGA (3) TGGTTGCTGG 289.8 0.2898 P10.5 crx+ retina GAACTGTAAA GAATCTGCTC GAGTGGCAGG (2) GGCAACAGGA (3) TGGTTGCTGG 109.5 0.1095 Adult retinal CAGACAGAAA CGTACCTGTC GGCAACAGGA (3) TGCCAGGGAC TGGTTGCTGG TTTTTATACC 228 0.228 ONL AGGGAAATAA (3) CAGACAGAAA GGCAACAGGA (3) TGGTTGCTGG TGTTTGTGTT (3) 415.6 0.4156