Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.297	Actb	actin, beta, cytoplasmic	5	5 80.0 cM	11461
Gene Ontology	actin cytoskeleton | actin filament | cytoskeleton | cytoskeleton organization and biogenesis | motor activity | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	ACTB[actin, beta]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 188 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATACTTGGA 119.1 0.1191 P8 Cb GC CCCTGAGTCC 88.1 0.0881 P8 Cb GC GCTTTGTTTT (2) 44 0.044 P8 Cb GC GAGAAGATCT (2) 19.6 0.0196 P8 Cb GC AAATAAGTGG (3) 9.8 0.0098 P8 Cb GC GACGCGACCA 9.8 0.0098 P8 Cb GC AAGATCCTGA (2) 6.5 0.0065 P8 Cb GC GATGCCACAG (4) 6.5 0.0065 P8 Cb GC AAGATCAAGG (2) 4.9 0.0049 P8 Cb GC GTGCTAGGAG (2) 4.9 0.0049 P8 Cb GC TACGTAGCCA 4.9 0.0049 P8 Cb GC TGCAAAGCCG (2) 4.9 0.0049 P8 Cb GC AAATGGTGAC 3.3 0.0033 P8 Cb GC AACATAATTA 3.3 0.0033 P8 Cb GC TTTGAGACCT (2) 3.3 0.0033 P8 Cb GC AAGTGTGACG (3) 1.6 0.0016 P8 Cb GC AGATCTGACG 1.6 0.0016 P8 Cb GC GTGCTAGGAA 1.6 0.0016 P8 Cb GC GTGGTACCAG 1.6 0.0016 Cb medulloblastoma GATACTTGGA 25.4 0.0254 Cb medulloblastoma GCTTTGTTTT (2) 16.2 0.0162 Cb medulloblastoma AAAACTACAT (3) 4.6 0.0046 Cb medulloblastoma CCCTGAGTCC 4.6 0.0046 Cb medulloblastoma GTGGTACCGC 4.6 0.0046 Cb medulloblastoma AAATAAGTGG (3) 2.3 0.0023 Cb medulloblastoma AAGATCCTGA (2) 2.3 0.0023 Cb medulloblastoma GAGAAGATCT (2) 2.3 0.0023 Cb medulloblastoma GTGGTACAGG 2.3 0.0023 P8 GC+1d culture CCCTGAGTCC 79.9 0.0799 P8 GC+1d culture GATACTTGGA 78.8 0.0788 P8 GC+1d culture GCTTTGTTTT (2) 28.5 0.0285 P8 GC+1d culture GTGGTACCAG 9.1 0.0091 P8 GC+1d culture GACGCGACCA 5.7 0.0057 P8 GC+1d culture AAATAAGTGG (3) 2.3 0.0023 P8 GC+1d culture AGATCTGACG 1.1 0.0011 P8 GC+1d culture GGCAGGGGTG (2) 1.1 0.0011 P8 GC+1d culture GTGGTACAGG 1.1 0.0011 P8 GC+SHH+1d culture GATACTTGGA 113.6 0.1136 P8 GC+SHH+1d culture CCCTGAGTCC 65.6 0.0656 P8 GC+SHH+1d culture GCTTTGTTTT (2) 46.8 0.0468 P8 GC+SHH+1d culture GACGCGACCA 4.7 0.0047 P8 GC+SHH+1d culture GTGGTACCAG 3.5 0.0035 P8 GC+SHH+1d culture AAATAAGTGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GAGAAGATCT (2) 2.3 0.0023 P8 GC+SHH+1d culture AACATAATTA 1.2 0.0012 P8 GC+SHH+1d culture AAGATCCTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture AGATCTGACG 1.2 0.0012 P8 GC+SHH+1d culture AGCCTGGCGG 1.2 0.0012 3T3 fibroblasts CCCTGAGTCC 385.5 0.3855 3T3 fibroblasts GATACTTGGA 112.2 0.1122 3T3 fibroblasts AAGTGTGACG (3) 7 0.007 3T3 fibroblasts GACGCGACCA 7 0.007 3T3 fibroblasts GAGAAGATCT (2) 7 0.007 3T3 fibroblasts GCTTTGTTTT (2) 7 0.007 3T3 fibroblasts AAGATCCTGA (2) 3.5 0.0035 3T3 fibroblasts GGGAAAGCCC (2) 3.5 0.0035 3T3 fibroblasts GTGGTACCAG 3.5 0.0035 3T3 fibroblasts TGTACTGTAT 3.5 0.0035 E15 cortex CCCTGAGTCC 197.9 0.1979 E15 cortex GATACTTGGA 108.9 0.1089 E15 cortex AGCCTGGCGG 24.7 0.0247 E15 cortex GACGCGACCA 9.9 0.0099 E15 cortex GGGAAAGCCC (2) 9.9 0.0099 E15 cortex AAATAAGTGG (3) 4.9 0.0049 E15 cortex AAGATCAAGG (2) 4.9 0.0049 E15 cortex AAGATCCTGA (2) 4.9 0.0049 E15 cortex AAGTGTGACG (3) 4.9 0.0049 E15 cortex AGATCTGACG 4.9 0.0049 E15 cortex GAGAAGATCT (2) 4.9 0.0049 E15 cortex GCCAAGATCT 4.9 0.0049 E15 cortex GCTTTGTTTT (2) 4.9 0.0049 E15 cortex GGCAGGGGTG (2) 4.9 0.0049 P1 cortex GATACTTGGA 613.6 0.6136 P1 cortex CCCTGAGTCC 113.6 0.1136 P1 cortex TGTACTGTAT 13.6 0.0136 P1 cortex GACGCGACCA 9.1 0.0091 P1 cortex GCTTTGTTTT (2) 9.1 0.0091 P1 cortex AAGATCAAGG (2) 4.5 0.0045 P1 cortex AGCCTGGCGG 4.5 0.0045 P1 cortex GCCAAGATCT 4.5 0.0045 P1 cortex GTGGTACCAG 4.5 0.0045 Hypothalamus GATACTTGGA 14.5 0.0145 Hypothalamus CCCTGAGTCC 5.4 0.0054 Hypothalamus GATGCCACAG (4) 3.6 0.0036 Hypothalamus GCTTTGTTTT (2) 3.6 0.0036 Hypothalamus AAGATCCTGA (2) 1.8 0.0018 Hypothalamus GACGCGACCA 1.8 0.0018 Hypothalamus GAGAAGATCT (2) 1.8 0.0018 Hypothalamus GGCAGGGGTG (2) 1.8 0.0018 E12.5 retina GATACTTGGA 120.1 0.1201 E12.5 retina CCCTGAGTCC 43.2 0.0432 E12.5 retina GCTTTGTTTT (2) 24.4 0.0244 E12.5 retina GACGCGACCA 9.4 0.0094 E12.5 retina GTGGTACCAG 3.8 0.0038 E12.5 retina AAGATCAAGG (2) 1.9 0.0019 E12.5 retina TACGTAGCCA 1.9 0.0019 E14.5 retina GATACTTGGA 21.9 0.0219 E14.5 retina GCTTTGTTTT (2) 9.1 0.0091 E14.5 retina GACGCGACCA 5.5 0.0055 E14.5 retina AAATAAGTGG (3) 3.6 0.0036 E14.5 retina TACGTAGCCA 3.6 0.0036 E14.5 retina AAATGGTGAC 1.8 0.0018 E14.5 retina AAGATCCTGA (2) 1.8 0.0018 E14.5 retina AAGTGTGACG (3) 1.8 0.0018 E14.5 retina AGCCTGGCGG 1.8 0.0018 E14.5 retina CCCTGAGTCC 1.8 0.0018 E14.5 retina GCCAAGATCT 1.8 0.0018 E14.5 retina GGCAGGGGTG (2) 1.8 0.0018 E14.5 retina GTGGTACAGG 1.8 0.0018 E16.5 retina GCTTTGTTTT (2) 19.9 0.0199 E16.5 retina CCCTGAGTCC 10.9 0.0109 E16.5 retina GATACTTGGA 10.9 0.0109 E16.5 retina AAATAAGTGG (3) 3.6 0.0036 E16.5 retina AAATGGTGAC 1.8 0.0018 E16.5 retina GACGCGACCA 1.8 0.0018 E16.5 retina GCCAAGATCT 1.8 0.0018 E16.5 retina GTGCTAGGAG (2) 1.8 0.0018 E16.5 retina GTGGTACCAG 1.8 0.0018 E16.5 retina TACGTAGCCA 1.8 0.0018 E18.5 retina GATACTTGGA 40 0.04 E18.5 retina CCCTGAGTCC 16.4 0.0164 E18.5 retina GCTTTGTTTT (2) 16.4 0.0164 E18.5 retina GACGCGACCA 7.3 0.0073 E18.5 retina AAATAAGTGG (3) 1.8 0.0018 E18.5 retina AAATGGTGAC 1.8 0.0018 E18.5 retina GTGGTACCAG 1.8 0.0018 P0.5 retina GATACTTGGA 66.7 0.0667 P0.5 retina CCCTGAGTCC 25.5 0.0255 P0.5 retina GCTTTGTTTT (2) 9.8 0.0098 P0.5 retina GTGGTACCAG 5.9 0.0059 P0.5 retina GACGCGACCA 3.9 0.0039 P0.5 retina AAATAAGTGG (3) 2 0.002 P0.5 retina TGTACTGTAT 2 0.002 P2.5 retina GATACTTGGA 58.1 0.0581 P2.5 retina CCCTGAGTCC 22.9 0.0229 P2.5 retina GCTTTGTTTT (2) 17.6 0.0176 P2.5 retina GACGCGACCA 10.6 0.0106 P2.5 retina GGCAGGGGTG (2) 7 0.007 P2.5 retina GTGCTAGGAG (2) 7 0.007 P2.5 retina AGCCTGGCGG 1.8 0.0018 P2.5 retina GCCAAGATCT 1.8 0.0018 P2.5 retina GTGCTAGGAA 1.8 0.0018 P2.5 retina GTGGTACCAG 1.8 0.0018 P4.5 retina GATACTTGGA 45.6 0.0456 P4.5 retina GACGCGACCA 13.9 0.0139 P4.5 retina CCCTGAGTCC 11.9 0.0119 P4.5 retina GCTTTGTTTT (2) 9.9 0.0099 P4.5 retina AGCCTGGCGG 4 0.004 P4.5 retina GGGAAAGCCC (2) 2 0.002 P4.5 retina GTGCTAGGAG (2) 2 0.002 P6.5 retina GATACTTGGA 65 0.065 P6.5 retina CCCTGAGTCC 23.3 0.0233 P6.5 retina GCTTTGTTTT (2) 13.3 0.0133 P6.5 retina GTGCTAGGAG (2) 8.3 0.0083 P6.5 retina GTGGTACCAG 5 0.005 P6.5 retina AGCCTGGCGG 3.3 0.0033 P6.5 retina GACGCGACCA 3.3 0.0033 P6.5 retina GAGAAGATCT (2) 1.7 0.0017 P6.5 retina GATGCCACAG (4) 1.7 0.0017 P6.5 retina TGTACTGTAT 1.7 0.0017 P10.5 crx- retina CCCTGAGTCC 14.9 0.0149 P10.5 crx- retina GATACTTGGA 9.3 0.0093 P10.5 crx- retina GCTTTGTTTT (2) 9.3 0.0093 P10.5 crx- retina GGCAGGGGTG (2) 1.9 0.0019 P10.5 crx- retina GTGCTAGGAG (2) 1.9 0.0019 P10.5 crx- retina GTGGTACCAG 1.9 0.0019 P10.5 crx+ retina GATACTTGGA 15.4 0.0154 P10.5 crx+ retina GTGCTAGGAG (2) 15.4 0.0154 P10.5 crx+ retina GCTTTGTTTT (2) 13.5 0.0135 P10.5 crx+ retina CCCTGAGTCC 11.5 0.0115 P10.5 crx+ retina GACGCGACCA 5.8 0.0058 P10.5 crx+ retina GAGAAGATCT (2) 1.9 0.0019 P10.5 crx+ retina GCCAAGATCT 1.9 0.0019 P10.5 crx+ retina GGCAGGGGTG (2) 1.9 0.0019 Adult retinal GTGCTAGGAG (2) 22.2 0.0222 Adult retinal GATACTTGGA 14.8 0.0148 Adult retinal CCCTGAGTCC 7.4 0.0074 Adult retinal GGCAGGGGTG (2) 5.6 0.0056 Adult retinal GCTTTGTTTT (2) 3.7 0.0037 Adult retinal AAAACTACAT (3) 1.9 0.0019 Adult retinal GTGCTAGGAA 1.9 0.0019 Adult retinal TTTGAGACCT (2) 1.9 0.0019 ONL CCCTGAGTCC 15.3 0.0153 ONL GTGCTAGGAG (2) 9.6 0.0096 ONL GATACTTGGA 5.7 0.0057 ONL GCTTTGTTTT (2) 5.7 0.0057 ONL GTGGTACAGG 5.7 0.0057 ONL GTGGTACCGC 1.9 0.0019