Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29855	Ptprf	protein tyrosine phosphatase, receptor type, F	4		19268
Gene Ontology	cell adhesion | extracellular space | hydrolase activity | integral to membrane | integral to plasma membrane | phosphoprotein phosphatase activity | plasma membrane | prenylated protein tyrosine phosphatase activity | protein amino acid dephosphorylation | protein binding | protein-tyrosine-phosphatase activity | receptor activity | transmembrane receptor protein tyrosine phosphatase activity | transmembrane receptor protein tyrosine phosphatase signaling pathway
Human Homolog	PTPRF[protein tyrosine phosphatase, receptor type, F]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 127 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGTGGGAAG (7) 6.5 0.0065 P8 Cb GC TTGGGATGTT (5) 3.3 0.0033 P8 Cb GC CCCCAGTATA (2) 1.6 0.0016 P8 Cb GC CTGGCTGAGG (9) 1.6 0.0016 P8 Cb GC GAAACTGAAG (3) 1.6 0.0016 P8 Cb GC GCACAGGGAG (4) 1.6 0.0016 P8 Cb GC GGGAGGACTA (4) 1.6 0.0016 P8 Cb GC GGGGTGGGAA (5) 1.6 0.0016 P8 Cb GC TCTGTCCTCA (4) 1.6 0.0016 P8 Cb GC TCTGTGGTTG 1.6 0.0016 Cb medulloblastoma TTGGGATGTT (5) 6.9 0.0069 Cb medulloblastoma GAGTTCCTGA (5) 4.6 0.0046 Cb medulloblastoma GAAACTGAAG (3) 2.3 0.0023 Cb medulloblastoma GCACAGGGAG (4) 2.3 0.0023 Cb medulloblastoma GGGGTGGGAA (5) 2.3 0.0023 P8 GC+1d culture GGGTGGGAAG (7) 12.6 0.0126 P8 GC+1d culture GTACTATACT 3.4 0.0034 P8 GC+1d culture GCGAGCCCCA 2.3 0.0023 P8 GC+1d culture GGGTGGGAAA (4) 2.3 0.0023 P8 GC+1d culture TTGGGATGTT (5) 2.3 0.0023 P8 GC+1d culture ACCTGGAAAA (5) 1.1 0.0011 P8 GC+1d culture GAGTTCCTGA (5) 1.1 0.0011 P8 GC+1d culture GGGTGGGGAA (9) 1.1 0.0011 P8 GC+SHH+1d culture GGGTGGGAAG (7) 18.7 0.0187 P8 GC+SHH+1d culture GGGTGGGAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture CCTCAAGTGC (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGGCTGAGG (9) 1.2 0.0012 P8 GC+SHH+1d culture GAGTTCCTGA (5) 1.2 0.0012 P8 GC+SHH+1d culture GGAATCTGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGGACTA (4) 1.2 0.0012 P8 GC+SHH+1d culture GTACTATACT 1.2 0.0012 P8 GC+SHH+1d culture TTGGGATGTT (5) 1.2 0.0012 3T3 fibroblasts GGGTGGGAAG (7) 28 0.028 3T3 fibroblasts GTGGTGCATT 3.5 0.0035 E15 cortex GGGTGGGAAG (7) 29.7 0.0297 E15 cortex TTGGGATGTT (5) 9.9 0.0099 E15 cortex GGGTGGGAAA (4) 4.9 0.0049 E15 cortex GTACTATACT 4.9 0.0049 E15 cortex GTGGTGCATT 4.9 0.0049 P1 cortex TTGGGATGTT (5) 22.7 0.0227 P1 cortex GGGGTGGGAA (5) 4.5 0.0045 P1 cortex GGGTGGGAAG (7) 4.5 0.0045 Hypothalamus TTGGGATGTT (5) 19.9 0.0199 Hypothalamus CTGGCTGAGG (9) 5.4 0.0054 Hypothalamus GGGTGGGAAG (7) 3.6 0.0036 Hypothalamus GAGTTCCTGA (5) 1.8 0.0018 Hypothalamus GCACAGGGAG (4) 1.8 0.0018 Hypothalamus GGGAGGACTA (4) 1.8 0.0018 E12.5 retina GGGTGGGAAG (7) 18.8 0.0188 E12.5 retina GCGAGCCCCA 3.8 0.0038 E12.5 retina GGGTGGGAAA (4) 3.8 0.0038 E12.5 retina GTACTATACT 3.8 0.0038 E12.5 retina CCTCAAGTGC (3) 1.9 0.0019 E12.5 retina GCAGGGCCAA (3) 1.9 0.0019 E12.5 retina GGAATCTGGA (5) 1.9 0.0019 E12.5 retina GGGTGGGGAA (9) 1.9 0.0019 E14.5 retina GGGTGGGAAG (7) 14.6 0.0146 E14.5 retina CCTCAAGTGC (3) 3.6 0.0036 E14.5 retina GTACTATACT 3.6 0.0036 E14.5 retina TTGGGATGTT (5) 3.6 0.0036 E14.5 retina CCCCAGTATA (2) 1.8 0.0018 E14.5 retina GCACAGGGAG (4) 1.8 0.0018 E14.5 retina GCAGGGCCAA (3) 1.8 0.0018 E14.5 retina GCGAGCCCCA 1.8 0.0018 E14.5 retina GGCCCACAGA (4) 1.8 0.0018 E14.5 retina TCTGTGGTTG 1.8 0.0018 E16.5 retina GGGTGGGAAG (7) 16.3 0.0163 E16.5 retina GTACTATACT 7.2 0.0072 E16.5 retina TTGGGATGTT (5) 5.4 0.0054 E16.5 retina GGCCCACAGA (4) 1.8 0.0018 E16.5 retina GGGTGGGGAA (9) 1.8 0.0018 E16.5 retina TCTGTCCTCA (4) 1.8 0.0018 E18.5 retina GGGTGGGAAG (7) 7.3 0.0073 E18.5 retina TTGGGATGTT (5) 5.5 0.0055 E18.5 retina GCGAGCCCCA 3.6 0.0036 E18.5 retina GGGAGGACTA (4) 1.8 0.0018 E18.5 retina GGGGTGGGAA (5) 1.8 0.0018 E18.5 retina GTACTATACT 1.8 0.0018 P0.5 retina GGGTGGGAAG (7) 11.8 0.0118 P0.5 retina GCGAGCCCCA 7.9 0.0079 P0.5 retina GTACTATACT 7.9 0.0079 P0.5 retina GGGTGGGAAA (4) 3.9 0.0039 P0.5 retina GCACAGGGAG (4) 2 0.002 P0.5 retina GGGGTGGGAA (5) 2 0.002 P2.5 retina GGGTGGGAAG (7) 28.2 0.0282 P2.5 retina TTGGGATGTT (5) 12.3 0.0123 P2.5 retina GGGTGGGAAA (4) 5.3 0.0053 P2.5 retina CCTCAAGTGC (3) 3.5 0.0035 P2.5 retina GCGAGCCCCA 3.5 0.0035 P2.5 retina ACCTGGAAAA (5) 1.8 0.0018 P2.5 retina GCACAGGGAG (4) 1.8 0.0018 P2.5 retina TCTGTGGTTG 1.8 0.0018 P4.5 retina GGGTGGGAAG (7) 13.9 0.0139 P4.5 retina TTGGGATGTT (5) 11.9 0.0119 P4.5 retina GCGAGCCCCA 5.9 0.0059 P4.5 retina CCCCAGTATA (2) 2 0.002 P4.5 retina GGGAGGACTA (4) 2 0.002 P6.5 retina GGGTGGGAAG (7) 23.3 0.0233 P6.5 retina TTGGGATGTT (5) 10 0.01 P6.5 retina GGGTGGGAAA (4) 5 0.005 P6.5 retina GGGTGGGGAA (9) 5 0.005 P6.5 retina GAGTTCCTGA (5) 1.7 0.0017 P6.5 retina GGAATCTGGA (5) 1.7 0.0017 P10.5 crx- retina TTGGGATGTT (5) 7.4 0.0074 P10.5 crx- retina GGGTGGGAAG (7) 5.6 0.0056 P10.5 crx- retina GTACTATACT 3.7 0.0037 P10.5 crx- retina CCCCAGTATA (2) 1.9 0.0019 P10.5 crx- retina GGCCCACAGA (4) 1.9 0.0019 P10.5 crx- retina GGGTGGGGAA (9) 1.9 0.0019 P10.5 crx+ retina GGGTGGGAAG (7) 9.6 0.0096 P10.5 crx+ retina GGGTGGGGAA (9) 7.7 0.0077 P10.5 crx+ retina ACCTGGAAAA (5) 5.8 0.0058 P10.5 crx+ retina GCGAGCCCCA 3.8 0.0038 P10.5 crx+ retina TTGGGATGTT (5) 3.8 0.0038 P10.5 crx+ retina GCAGGGCCAA (3) 1.9 0.0019 Adult retinal TTGGGATGTT (5) 18.5 0.0185 Adult retinal GTACTATACT 5.6 0.0056 Adult retinal GGGTGGGAAG (7) 3.7 0.0037 Adult retinal CCTCAAGTGC (3) 1.9 0.0019 Adult retinal GCGAGCCCCA 1.9 0.0019 Adult retinal GGGTGGGAAA (4) 1.9 0.0019 ONL GGGTGGGAAG (7) 5.7 0.0057 ONL GAAACTGAAG (3) 3.8 0.0038 ONL GGGTGGGGAA (9) 3.8 0.0038 ONL TTGGGATGTT (5) 3.8 0.0038 ONL GTGGTGCATT 1.9 0.0019 ONL TCTGTCCTCA (4) 1.9 0.0019