Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29855	Ptprf	protein tyrosine phosphatase, receptor type, F	4		19268
Gene Ontology	cell adhesion | extracellular space | hydrolase activity | integral to membrane | integral to plasma membrane | phosphoprotein phosphatase activity | plasma membrane | prenylated protein tyrosine phosphatase activity | protein amino acid dephosphorylation | protein binding | protein-tyrosine-phosphatase activity | receptor activity | transmembrane receptor protein tyrosine phosphatase activity | transmembrane receptor protein tyrosine phosphatase signaling pathway
Human Homolog	PTPRF[protein tyrosine phosphatase, receptor type, F]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 127 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCCAGTATA CTGGCTGAGG (2) GAAACTGAAG GCACAGGGAG GGGAGGACTA GGGGTGGGAA GGGTGGGAAG (3) TCTGTCCTCA (2) TCTGTGGTTG TTGGGATGTT (3) 22.6 0.0226 Cb medulloblastoma GAAACTGAAG GAGTTCCTGA (2) GCACAGGGAG GGGGTGGGAA TTGGGATGTT (3) 18.4 0.0184 P8 GC+1d culture ACCTGGAAAA GAGTTCCTGA (2) GCGAGCCCCA GGGTGGGAAA GGGTGGGAAG (3) GGGTGGGGAA (2) GTACTATACT TTGGGATGTT (3) 26.2 0.0262 P8 GC+SHH+1d culture CCTCAAGTGC (3) CTGGCTGAGG (2) GAGTTCCTGA (2) GGAATCTGGA GGGAGGACTA GGGTGGGAAA GGGTGGGAAG (3) GTACTATACT TTGGGATGTT (3) 29.4 0.0294 3T3 fibroblasts GGGTGGGAAG (3) GTGGTGCATT 31.5 0.0315 E15 cortex GGGTGGGAAA GGGTGGGAAG (3) GTACTATACT GTGGTGCATT TTGGGATGTT (3) 54.3 0.0543 P1 cortex GGGGTGGGAA GGGTGGGAAG (3) TTGGGATGTT (3) 31.7 0.0317 Hypothalamus CTGGCTGAGG (2) GAGTTCCTGA (2) GCACAGGGAG GGGAGGACTA GGGTGGGAAG (3) TTGGGATGTT (3) 34.3 0.0343 E12.5 retina CCTCAAGTGC (3) GCAGGGCCAA GCGAGCCCCA GGAATCTGGA GGGTGGGAAA GGGTGGGAAG (3) GGGTGGGGAA (2) GTACTATACT 37.8 0.0378 E14.5 retina CCCCAGTATA CCTCAAGTGC (3) GCACAGGGAG GCAGGGCCAA GCGAGCCCCA GGCCCACAGA GGGTGGGAAG (3) GTACTATACT TCTGTGGTTG TTGGGATGTT (3) 36.2 0.0362 E16.5 retina GGCCCACAGA GGGTGGGAAG (3) GGGTGGGGAA (2) GTACTATACT TCTGTCCTCA (2) TTGGGATGTT (3) 34.3 0.0343 E18.5 retina GCGAGCCCCA GGGAGGACTA GGGGTGGGAA GGGTGGGAAG (3) GTACTATACT TTGGGATGTT (3) 21.8 0.0218 P0.5 retina GCACAGGGAG GCGAGCCCCA GGGGTGGGAA GGGTGGGAAA GGGTGGGAAG (3) GTACTATACT 35.5 0.0355 P2.5 retina ACCTGGAAAA CCTCAAGTGC (3) GCACAGGGAG GCGAGCCCCA GGGTGGGAAA GGGTGGGAAG (3) TCTGTGGTTG TTGGGATGTT (3) 58.2 0.0582 P4.5 retina CCCCAGTATA GCGAGCCCCA GGGAGGACTA GGGTGGGAAG (3) TTGGGATGTT (3) 35.7 0.0357 P6.5 retina GAGTTCCTGA (2) GGAATCTGGA GGGTGGGAAA GGGTGGGAAG (3) GGGTGGGGAA (2) TTGGGATGTT (3) 46.7 0.0467 P10.5 crx- retina CCCCAGTATA GGCCCACAGA GGGTGGGAAG (3) GGGTGGGGAA (2) GTACTATACT TTGGGATGTT (3) 22.4 0.0224 P10.5 crx+ retina ACCTGGAAAA GCAGGGCCAA GCGAGCCCCA GGGTGGGAAG (3) GGGTGGGGAA (2) TTGGGATGTT (3) 32.6 0.0326 Adult retinal CCTCAAGTGC (3) GCGAGCCCCA GGGTGGGAAA GGGTGGGAAG (3) GTACTATACT TTGGGATGTT (3) 33.5 0.0335 ONL GAAACTGAAG GGGTGGGAAG (3) GGGTGGGGAA (2) GTGGTGCATT TCTGTCCTCA (2) TTGGGATGTT (3) 20.9 0.0209