Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298893	Csnk2a1	casein kinase II, alpha 1 polypeptide	2	2 H1	12995
Gene Ontology	ATP binding | beta-catenin binding | kinase activity | protein amino acid phosphorylation | protein binding | protein kinase activity | protein kinase CK2 complex | protein serine/threonine kinase activity | transferase activity | Wnt receptor signaling pathway
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 111 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GCACAACTTC (3) 9.8 0.0098 P8 Cb GC GCAGGGGGCA (2) 6.5 0.0065 P8 Cb GC AAGGTCTTTA 3.3 0.0033 P8 Cb GC TGGTGGAATG (4) 3.3 0.0033 P8 Cb GC AAATATTCCA (6) 1.6 0.0016 P8 Cb GC CCATCCAGTG (5) 1.6 0.0016 P8 Cb GC TATGAAATTC (2) 1.6 0.0016 P8 Cb GC TTGGATTTGT (3) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AAGGTCTTTA 4.6 0.0046 Cb medulloblastoma AAGGTTTTTA (2) 4.6 0.0046 Cb medulloblastoma GCACAACTTC (3) 2.3 0.0023 Cb medulloblastoma TGGTGGAATG (4) 2.3 0.0023 Cb medulloblastoma TTGGATTTGT (3) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture AAGGTCTTTA 5.7 0.0057 P8 GC+1d culture AAATATTCCA (6) 3.4 0.0034 P8 GC+1d culture CCATCCAGTG (5) 3.4 0.0034 P8 GC+1d culture AAGGTTTTTA (2) 1.1 0.0011 P8 GC+1d culture GCACAACTTC (3) 1.1 0.0011 P8 GC+1d culture GCAGGGGGCA (2) 1.1 0.0011 P8 GC+1d culture TGGTACTTTA (4) 1.1 0.0011 P8 GC+1d culture TGGTGGAATG (4) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture AAGGTCTTTA 9.4 0.0094 P8 GC+SHH+1d culture AAATATTCCA (6) 2.3 0.0023 P8 GC+SHH+1d culture GCAGGGGGCA (2) 2.3 0.0023 P8 GC+SHH+1d culture AAGGTTTTTA (2) 1.2 0.0012 P8 GC+SHH+1d culture CCATCCAGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GTACTGGGCA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGTACTTTA (4) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TGGTGGAATG (4) 10.5 0.0105 3T3 fibroblasts CCATCCAGTG (5) 7 0.007 3T3 fibroblasts GCAGGGGGCA (2) 7 0.007 3T3 fibroblasts TTGGATTTGT (3) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex TGGTGGAATG (4) 14.8 0.0148 E15 cortex GCACAACTTC (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AAATATTCCA (6) 13.6 0.0136 P1 cortex TGGTGGAATG (4) 9.1 0.0091 P1 cortex AAGGTCTTTA 4.5 0.0045 P1 cortex GCAGGGGGCA (2) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AAATATTCCA (6) 3.6 0.0036 Hypothalamus AAGGTTTTTA (2) 3.6 0.0036 Hypothalamus TGGTGGAATG (4) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina AAGGTCTTTA 20.7 0.0207 E12.5 retina GCACAACTTC (3) 1.9 0.0019 E12.5 retina GCAGGGGGCA (2) 1.9 0.0019 E12.5 retina TGGTGGAATG (4) 1.9 0.0019 E12.5 retina TTGGATTTGT (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AAGGTCTTTA 5.5 0.0055 E14.5 retina GTACTGGGCA (3) 3.6 0.0036 E14.5 retina TATGAAATTC (2) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GCACAACTTC (3) 3.6 0.0036 E16.5 retina AAGGTTTTTA (2) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AAGGTCTTTA 5.5 0.0055 E18.5 retina GCACAACTTC (3) 3.6 0.0036 E18.5 retina TGGTGGAATG (4) 3.6 0.0036 E18.5 retina AAATATTCCA (6) 1.8 0.0018 E18.5 retina AAGGTTTTTA (2) 1.8 0.0018 E18.5 retina GCAGGGGGCA (2) 1.8 0.0018 E18.5 retina GTACTGGGCA (3) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCAGGGGGCA (2) 7.9 0.0079 P0.5 retina AAATATTCCA (6) 3.9 0.0039 P0.5 retina TGGTGGAATG (4) 3.9 0.0039 P0.5 retina AAGGTCTTTA 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina AAGGTCTTTA 8.8 0.0088 P2.5 retina GCAGGGGGCA (2) 3.5 0.0035 P2.5 retina AAATATTCCA (6) 1.8 0.0018 P2.5 retina AAGGTTTTTA (2) 1.8 0.0018 P2.5 retina TATGAAATTC (2) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AAGGTCTTTA 13.9 0.0139 P4.5 retina TGGTGGAATG (4) 7.9 0.0079 P4.5 retina AAGGTTTTTA (2) 5.9 0.0059 P4.5 retina AAATATTCCA (6) 2 0.002 P4.5 retina CCATCCAGTG (5) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina AAGGTCTTTA 20 0.02 P6.5 retina AAATATTCCA (6) 8.3 0.0083 P6.5 retina AAGGTTTTTA (2) 1.7 0.0017 P6.5 retina GCACAACTTC (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina AAGGTCTTTA 7.4 0.0074 P10.5 crx- retina AAGGTTTTTA (2) 3.7 0.0037 P10.5 crx- retina AAATATTCCA (6) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina AAATATTCCA (6) 7.7 0.0077 P10.5 crx+ retina GCACAACTTC (3) 3.8 0.0038 P10.5 crx+ retina AAGGTCTTTA 1.9 0.0019 P10.5 crx+ retina TGGTGGAATG (4) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal AAGGTCTTTA 3.7 0.0037 Adult retinal CCATCCAGTG (5) 1.9 0.0019 Adult retinal GCACAACTTC (3) 1.9 0.0019 Adult retinal GCAGGGGGCA (2) 1.9 0.0019 Adult retinal TGGTACTTTA (4) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AAATATTCCA (6) 3.8 0.0038 ONL AAGGTCTTTA 1.9 0.0019 ONL TATGAAATTC (2) 1.9 0.0019