Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29966	Ptbp2	polypyrimidine tract binding protein 2	3		56195
Gene Ontology	mRNA splice site selection | nucleic acid binding | pre-mRNA splicing factor activity | spliceosome complex
Human Homolog	PTBP2[polypyrimidine tract binding protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 148 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACTGATTTA (4) 26.1 0.0261 P8 Cb GC CTCAATAAAC (4) 9.8 0.0098 P8 Cb GC TATTTTTAAA (14) 6.5 0.0065 P8 Cb GC TATGGCCTTT (3) 3.3 0.0033 P8 Cb GC AAAAAAAATA (12) 1.6 0.0016 P8 Cb GC ATTCTGACAA (2) 1.6 0.0016 P8 Cb GC GCTCATTAAA (2) 1.6 0.0016 P8 Cb GC TATATTTTCT 1.6 0.0016 P8 Cb GC TATATTTTTT (7) 1.6 0.0016 Cb medulloblastoma CACTGATTTA (4) 39.3 0.0393 Cb medulloblastoma GCTCATTAAA (2) 9.2 0.0092 Cb medulloblastoma AAAAAAAATA (12) 4.6 0.0046 Cb medulloblastoma TATATTTTCT 2.3 0.0023 Cb medulloblastoma TATTTTTCAA (3) 2.3 0.0023 P8 GC+1d culture CACTGATTTA (4) 45.7 0.0457 P8 GC+1d culture TATATTTTCT 13.7 0.0137 P8 GC+1d culture AAAAAAAATA (12) 1.1 0.0011 P8 GC+1d culture CTGTTATCAT (2) 1.1 0.0011 P8 GC+1d culture GCTCATTAAA (2) 1.1 0.0011 P8 GC+1d culture TATTTTTCAA (3) 1.1 0.0011 P8 GC+SHH+1d culture CACTGATTTA (4) 44.5 0.0445 P8 GC+SHH+1d culture TATATTTTCT 7 0.007 P8 GC+SHH+1d culture CTCAATAAAC (4) 5.9 0.0059 P8 GC+SHH+1d culture TATGTAATAT (5) 3.5 0.0035 P8 GC+SHH+1d culture GCTCATTAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TATGGCCTTT (3) 2.3 0.0023 P8 GC+SHH+1d culture CAGCTTTTAA (2) 1.2 0.0012 P8 GC+SHH+1d culture CCATCATCAG (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGTTATCAT (2) 1.2 0.0012 P8 GC+SHH+1d culture TATTTTTCAA (3) 1.2 0.0012 3T3 fibroblasts CACTGATTTA (4) 3.5 0.0035 E15 cortex CACTGATTTA (4) 14.8 0.0148 E15 cortex GCTCATTAAA (2) 9.9 0.0099 P1 cortex CACTGATTTA (4) 27.3 0.0273 P1 cortex TCTCTATTAA (2) 18.2 0.0182 P1 cortex CTCAATAAAC (4) 9.1 0.0091 P1 cortex CCATCATCAG (6) 4.5 0.0045 P1 cortex TATTTTTAAA (14) 4.5 0.0045 P1 cortex TATTTTTCAA (3) 4.5 0.0045 Hypothalamus CACTGATTTA (4) 58 0.058 Hypothalamus TATTTTTCAA (3) 3.6 0.0036 Hypothalamus CTCAATAAAC (4) 1.8 0.0018 Hypothalamus GCTCATTAAA (2) 1.8 0.0018 Hypothalamus TATATTTTCT 1.8 0.0018 Hypothalamus TATGGCCTTT (3) 1.8 0.0018 E12.5 retina CACTGATTTA (4) 28.2 0.0282 E12.5 retina CTCAATAAAC (4) 5.6 0.0056 E12.5 retina TTTACTCTGC 5.6 0.0056 E12.5 retina GCTCATTAAA (2) 3.8 0.0038 E12.5 retina TATGGCCTTT (3) 3.8 0.0038 E12.5 retina TATTTTTAAA (14) 3.8 0.0038 E12.5 retina CAGCTTTTAA (2) 1.9 0.0019 E12.5 retina CTGTTATCAT (2) 1.9 0.0019 E12.5 retina TATATTTTCT 1.9 0.0019 E14.5 retina CACTGATTTA (4) 31 0.031 E14.5 retina TATATTTTCT 9.1 0.0091 E14.5 retina TATTTTTAAA (14) 7.3 0.0073 E14.5 retina CTCAATAAAC (4) 3.6 0.0036 E14.5 retina GCTCAGAATC 1.8 0.0018 E14.5 retina GCTCATTAAA (2) 1.8 0.0018 E14.5 retina TATATTTTTT (7) 1.8 0.0018 E14.5 retina TTTACTCTGC 1.8 0.0018 E16.5 retina CACTGATTTA (4) 38 0.038 E16.5 retina TATATTTTCT 14.5 0.0145 E16.5 retina CTCAATAAAC (4) 3.6 0.0036 E16.5 retina GCTCATTAAA (2) 3.6 0.0036 E16.5 retina TATTTTTAAA (14) 3.6 0.0036 E16.5 retina AAAAAAAATA (12) 1.8 0.0018 E16.5 retina GCTCAGAATC 1.8 0.0018 E16.5 retina TATTTTTCAA (3) 1.8 0.0018 E16.5 retina TCTCTATTAA (2) 1.8 0.0018 E16.5 retina TTTACTCTGC 1.8 0.0018 E16.5 retina TTTTTATTAA (8) 1.8 0.0018 E18.5 retina CACTGATTTA (4) 30.9 0.0309 E18.5 retina TATATTTTCT 7.3 0.0073 E18.5 retina CTCAATAAAC (4) 5.5 0.0055 E18.5 retina AAAAAAAATA (12) 3.6 0.0036 E18.5 retina GCTCAGAATC 1.8 0.0018 E18.5 retina TATATTTTTT (7) 1.8 0.0018 E18.5 retina TATTTTTAAA (14) 1.8 0.0018 P0.5 retina CACTGATTTA (4) 31.4 0.0314 P0.5 retina CTCAATAAAC (4) 9.8 0.0098 P0.5 retina ATTCTGACAA (2) 5.9 0.0059 P0.5 retina TCTCTATTAA (2) 3.9 0.0039 P0.5 retina TATTTTTAAA (14) 2 0.002 P0.5 retina TATTTTTCAA (3) 2 0.002 P0.5 retina TTTTTATTAA (8) 2 0.002 P2.5 retina CACTGATTTA (4) 37 0.037 P2.5 retina CTCAATAAAC (4) 15.8 0.0158 P2.5 retina TATATTTTCT 10.6 0.0106 P2.5 retina TATTTTTAAA (14) 5.3 0.0053 P2.5 retina CAGCTTTTAA (2) 3.5 0.0035 P2.5 retina GCTCATTAAA (2) 3.5 0.0035 P2.5 retina TTTACTCTGC 3.5 0.0035 P2.5 retina CTGTTATCAT (2) 1.8 0.0018 P4.5 retina CACTGATTTA (4) 41.6 0.0416 P4.5 retina GCTCATTAAA (2) 15.9 0.0159 P4.5 retina AAAAAAAATA (12) 5.9 0.0059 P4.5 retina TATATTTTCT 4 0.004 P4.5 retina CTCAATAAAC (4) 2 0.002 P4.5 retina TATTTTTAAA (14) 2 0.002 P4.5 retina TCTCTATTAA (2) 2 0.002 P6.5 retina CACTGATTTA (4) 56.7 0.0567 P6.5 retina CTCAATAAAC (4) 6.7 0.0067 P6.5 retina TATATTTTCT 6.7 0.0067 P6.5 retina TATTTTTAAA (14) 6.7 0.0067 P6.5 retina GCTCATTAAA (2) 5 0.005 P6.5 retina CAGCTTTTAA (2) 1.7 0.0017 P6.5 retina CCTGGAGTCT (2) 1.7 0.0017 P6.5 retina TATTTTTCAA (3) 1.7 0.0017 P10.5 crx- retina CACTGATTTA (4) 37.2 0.0372 P10.5 crx- retina CAGCTTTTAA (2) 3.7 0.0037 P10.5 crx- retina CTCAATAAAC (4) 3.7 0.0037 P10.5 crx- retina TATATTTTCT 3.7 0.0037 P10.5 crx- retina TATGGCCTTT (3) 3.7 0.0037 P10.5 crx- retina TATGTAATAT (5) 3.7 0.0037 P10.5 crx- retina CTGTTATCAT (2) 1.9 0.0019 P10.5 crx- retina GCTCATTAAA (2) 1.9 0.0019 P10.5 crx- retina TATTTTTAAA (14) 1.9 0.0019 P10.5 crx- retina TCTCTATTAA (2) 1.9 0.0019 P10.5 crx+ retina CACTGATTTA (4) 46.1 0.0461 P10.5 crx+ retina CTCAATAAAC (4) 7.7 0.0077 P10.5 crx+ retina TATTTTTAAA (14) 5.8 0.0058 P10.5 crx+ retina CTGTTATCAT (2) 3.8 0.0038 P10.5 crx+ retina GCTCATTAAA (2) 3.8 0.0038 P10.5 crx+ retina TATATTTTCT 1.9 0.0019 P10.5 crx+ retina TATGGCCTTT (3) 1.9 0.0019 P10.5 crx+ retina TTTACTCTGC 1.9 0.0019 Adult retinal TATGGCCTTT (3) 20.4 0.0204 Adult retinal CACTGATTTA (4) 16.7 0.0167 Adult retinal TCTCTATTAA (2) 5.6 0.0056 Adult retinal CCATCATCAG (6) 1.9 0.0019 Adult retinal CCTGGAGTCT (2) 1.9 0.0019 Adult retinal TTTACTCTGC 1.9 0.0019 Adult retinal TTTTTATTAA (8) 1.9 0.0019 ONL TATGGCCTTT (3) 9.6 0.0096 ONL AAAAAAAATA (12) 5.7 0.0057 ONL CACTGATTTA (4) 5.7 0.0057 ONL GCTCATTAAA (2) 5.7 0.0057 ONL ATTCTGACAA (2) 1.9 0.0019 ONL CAGCTTTTAA (2) 1.9 0.0019 ONL CCTGGAGTCT (2) 1.9 0.0019 ONL CTCAATAAAC (4) 1.9 0.0019 ONL TATATTTTCT 1.9 0.0019 ONL TATTTTTAAA (14) 1.9 0.0019 ONL TATTTTTCAA (3) 1.9 0.0019 ONL TCTCTATTAA (2) 1.9 0.0019 ONL TTTACTCTGC 1.9 0.0019