Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30012	BB136667	expressed sequence BB136667	1		98743
Mm.30012	Hdlbp	high density lipoprotein (HDL) binding protein	1	1 55.3 cM	110611
Gene Ontology	cholesterol metabolism | lipid transport | lipid transporter activity | nucleic acid binding | nucleus | RNA binding
Human Homolog	HDLBP[high density lipoprotein binding protein (vigilin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCTCAGGAA (2) 13.1 0.0131 P8 Cb GC AATATGGATG (6) 3.3 0.0033 P8 Cb GC AAAGCCCTGC (7) 1.6 0.0016 P8 Cb GC GAGGGAATCC (5) 1.6 0.0016 Cb medulloblastoma AATATGGATG (6) 9.2 0.0092 Cb medulloblastoma GAAAATGAGA (3) 4.6 0.0046 Cb medulloblastoma ACCTCAGGAA (2) 2.3 0.0023 Cb medulloblastoma GCTTCAAAAA (5) 2.3 0.0023 P8 GC+1d culture AATATGGATG (6) 8 0.008 P8 GC+1d culture ACCTCAGGAA (2) 5.7 0.0057 P8 GC+1d culture ACCTCCAGGA (4) 4.6 0.0046 P8 GC+1d culture AAGTCAACGT (3) 1.1 0.0011 P8 GC+1d culture GAGGAATGTG (5) 1.1 0.0011 P8 GC+1d culture GAGGGAATCC (5) 1.1 0.0011 P8 GC+1d culture GCTTCAAAAA (5) 1.1 0.0011 P8 GC+1d culture GGGCCCAAGC (13) 1.1 0.0011 P8 GC+1d culture GGGGCGCACA (3) 1.1 0.0011 P8 GC+1d culture TATTCAGCAC (2) 1.1 0.0011 P8 GC+SHH+1d culture AATATGGATG (6) 5.9 0.0059 P8 GC+SHH+1d culture ACCTCAGGAA (2) 5.9 0.0059 P8 GC+SHH+1d culture ACCTCCAGGA (4) 3.5 0.0035 3T3 fibroblasts ACCTCCAGGA (4) 52.6 0.0526 3T3 fibroblasts GAAAATGAGA (3) 24.5 0.0245 3T3 fibroblasts CAGGAGACAG (6) 17.5 0.0175 3T3 fibroblasts ACCTCAGGAA (2) 7 0.007 E15 cortex GAAAATGAGA (3) 24.7 0.0247 E15 cortex CAGGAGACCG (3) 4.9 0.0049 E15 cortex TAGTCAGCAC (2) 4.9 0.0049 P1 cortex AATATGGATG (6) 4.5 0.0045 P1 cortex CAAAGGCTTT (2) 4.5 0.0045 P1 cortex GAAAATGAGA (3) 4.5 0.0045 Hypothalamus GAAAATGAGA (3) 14.5 0.0145 Hypothalamus AATATGGATG (6) 5.4 0.0054 Hypothalamus ACCTCAGGAA (2) 1.8 0.0018 Hypothalamus CAGGAGACAG (6) 1.8 0.0018 E12.5 retina AATATGGATG (6) 15 0.015 E12.5 retina ACCTCAGGAA (2) 5.6 0.0056 E12.5 retina ACCTCCAGGA (4) 5.6 0.0056 E12.5 retina AAGTCAACGT (3) 1.9 0.0019 E12.5 retina GAAAATGAGA (3) 1.9 0.0019 E12.5 retina GAGGAATGTG (5) 1.9 0.0019 E14.5 retina GAAAATGAGA (3) 686.9 0.6869 E14.5 retina AATATGGATG (6) 7.3 0.0073 E14.5 retina ACCTCAGGAA (2) 5.5 0.0055 E14.5 retina AAGTCAACGT (3) 1.8 0.0018 E14.5 retina CAAAGGCTTT (2) 1.8 0.0018 E14.5 retina TAGTCAGCAC (2) 1.8 0.0018 E16.5 retina GAAAATGAGA (3) 32.6 0.0326 E16.5 retina AATATGGATG (6) 9.1 0.0091 E16.5 retina ACCTCAGGAA (2) 9.1 0.0091 E16.5 retina GCTGCTCTTG (7) 3.6 0.0036 E16.5 retina GGTCCCAAAA (10) 3.6 0.0036 E16.5 retina TAGTCAGCAC (2) 3.6 0.0036 E16.5 retina AAAGCCCTGC (7) 1.8 0.0018 E16.5 retina CAAAGGCTTT (2) 1.8 0.0018 E16.5 retina GAGGAATGTG (5) 1.8 0.0018 E16.5 retina GAGGGAATCC (5) 1.8 0.0018 E18.5 retina ACCTCAGGAA (2) 18.2 0.0182 E18.5 retina ACCTCCAGGA (4) 3.6 0.0036 E18.5 retina GAAAATGAGA (3) 1.8 0.0018 E18.5 retina GCTTCAAAAA (5) 1.8 0.0018 P0.5 retina ACCTCAGGAA (2) 7.9 0.0079 P0.5 retina GGGCCCAAGC (13) 7.9 0.0079 P0.5 retina GAAAATGAGA (3) 5.9 0.0059 P0.5 retina CAAAGGCTTT (2) 2 0.002 P2.5 retina AATATGGATG (6) 1.8 0.0018 P2.5 retina ACCTCAGGAA (2) 1.8 0.0018 P2.5 retina CAGGAGACCG (3) 1.8 0.0018 P2.5 retina GAAAATGAGA (3) 1.8 0.0018 P2.5 retina GAGGAATGTG (5) 1.8 0.0018 P2.5 retina TAGTCAGCAC (2) 1.8 0.0018 P4.5 retina AATATGGATG (6) 5.9 0.0059 P4.5 retina GAAAATGAGA (3) 5.9 0.0059 P4.5 retina ACCTCAGGAA (2) 4 0.004 P4.5 retina ACCTCCAGGA (4) 2 0.002 P4.5 retina GGGGCGCACA (3) 2 0.002 P4.5 retina GGTCCCAAAA (10) 2 0.002 P6.5 retina GAAAATGAGA (3) 8.3 0.0083 P6.5 retina AATATGGATG (6) 5 0.005 P6.5 retina AAGTCAACGT (3) 1.7 0.0017 P10.5 crx- retina AATATGGATG (6) 11.1 0.0111 P10.5 crx- retina GAAAATGAGA (3) 7.4 0.0074 P10.5 crx- retina ACCTCAGGAA (2) 3.7 0.0037 P10.5 crx- retina GAGGAATGTG (5) 3.7 0.0037 P10.5 crx- retina AAAGCCCTGC (7) 1.9 0.0019 P10.5 crx- retina ACCTCCAGGA (4) 1.9 0.0019 P10.5 crx- retina GAGGGAATCC (5) 1.9 0.0019 P10.5 crx+ retina AATATGGATG (6) 5.8 0.0058 P10.5 crx+ retina GAAAATGAGA (3) 3.8 0.0038 P10.5 crx+ retina AAGTCAACGT (3) 1.9 0.0019 P10.5 crx+ retina ACCTCAGGAA (2) 1.9 0.0019 P10.5 crx+ retina CAAAGGCTTT (2) 1.9 0.0019 P10.5 crx+ retina TAGTCAGCAC (2) 1.9 0.0019 P10.5 crx+ retina TATTCAGCAC (2) 1.9 0.0019 Adult retinal GAAAATGAGA (3) 20.4 0.0204 Adult retinal AATATGGATG (6) 11.1 0.0111 Adult retinal ACCTCCAGGA (4) 3.7 0.0037 Adult retinal CAGGAGACCG (3) 1.9 0.0019 Adult retinal GGGGCGCACA (3) 1.9 0.0019 ONL GAAAATGAGA (3) 78.5 0.0785 ONL AATATGGATG (6) 9.6 0.0096 ONL ACCTCCAGGA (4) 3.8 0.0038 ONL ACCTCAGGAA (2) 1.9 0.0019 ONL GAGGAATGTG (5) 1.9 0.0019 ONL GCTGCTCTTG (7) 1.9 0.0019 ONL GGGGCGCACA (3) 1.9 0.0019