Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.300203	E130009G09Rik	RIKEN cDNA E130009G09 gene	11		320062
Mm.300203	Ssh2	slingshot homolog 2 (Drosophila)	11		237860
Human Homolog	SSH2[slingshot homolog 2 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 151 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCACACAGAT (5) 21.2 0.0212 P8 Cb GC TATTAGTCTT (6) 21.2 0.0212 P8 Cb GC GAGGCTTTGC (6) 11.4 0.0114 P8 Cb GC GCTTAGAAGT (4) 8.2 0.0082 P8 Cb GC CTAACAGGAT (4) 3.3 0.0033 P8 Cb GC ATTTTTGTTT (16) 1.6 0.0016 Cb medulloblastoma TATTAGTCTT (6) 11.6 0.0116 Cb medulloblastoma CCACACAGAT (5) 9.2 0.0092 Cb medulloblastoma CAGAATTAAC (4) 6.9 0.0069 Cb medulloblastoma GAGGCTTTGC (6) 4.6 0.0046 Cb medulloblastoma AAGGCTTTGG (5) 2.3 0.0023 Cb medulloblastoma ATGATAAACT (6) 2.3 0.0023 Cb medulloblastoma ATTTTTGTTT (16) 2.3 0.0023 Cb medulloblastoma GATAACTGTG (5) 2.3 0.0023 Cb medulloblastoma GCTTAGAAGT (4) 2.3 0.0023 Cb medulloblastoma TTTGCTCTGG (5) 2.3 0.0023 P8 GC+1d culture TATTAGTCTT (6) 37.7 0.0377 P8 GC+1d culture CCACACAGAT (5) 4.6 0.0046 P8 GC+1d culture TTTGCTCTGG (5) 4.6 0.0046 P8 GC+1d culture AAAACAGGAA (3) 1.1 0.0011 P8 GC+1d culture AAAACTAAGG (4) 1.1 0.0011 P8 GC+1d culture ATTTTTGTTT (16) 1.1 0.0011 P8 GC+1d culture CCACAATCTG (4) 1.1 0.0011 P8 GC+1d culture GCAGCAAAGA (5) 1.1 0.0011 P8 GC+1d culture GTGTTGCTGT (6) 1.1 0.0011 P8 GC+SHH+1d culture TATTAGTCTT (6) 23.4 0.0234 P8 GC+SHH+1d culture CCACACAGAT (5) 11.7 0.0117 P8 GC+SHH+1d culture ATTTTTGTTT (16) 5.9 0.0059 P8 GC+SHH+1d culture GAGGCTTTGC (6) 3.5 0.0035 P8 GC+SHH+1d culture GCTTAGAAGT (4) 2.3 0.0023 P8 GC+SHH+1d culture AAAACAGGAA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTTTCGGAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture GAAGAAGTAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGTTGCTGT (6) 1.2 0.0012 P8 GC+SHH+1d culture TTTGCTCTGG (5) 1.2 0.0012 3T3 fibroblasts GAGGCTTTGC (6) 77.1 0.0771 3T3 fibroblasts GTGTTGCTGT (6) 7 0.007 3T3 fibroblasts AAGGCTTTGG (5) 3.5 0.0035 3T3 fibroblasts GAGGCTTTGG (10) 3.5 0.0035 3T3 fibroblasts GCTTAGAAGT (4) 3.5 0.0035 E15 cortex GAGGCTTTGC (6) 84.1 0.0841 E15 cortex GCTTAGAAGT (4) 14.8 0.0148 E15 cortex GAAGAAGTAG (6) 4.9 0.0049 E15 cortex GATAACTGTG (5) 4.9 0.0049 P1 cortex GAGGCTTTGC (6) 18.2 0.0182 P1 cortex GCTTAGAAGT (4) 18.2 0.0182 P1 cortex TATTAGTCTT (6) 13.6 0.0136 P1 cortex CCACACAGAT (5) 9.1 0.0091 Hypothalamus TATTAGTCTT (6) 16.3 0.0163 Hypothalamus GAGGCTTTGC (6) 10.9 0.0109 Hypothalamus CCACACAGAT (5) 9.1 0.0091 Hypothalamus CTTTCGGAGA (4) 3.6 0.0036 Hypothalamus AAGGCTTTGG (5) 1.8 0.0018 Hypothalamus CAGAATTAAC (4) 1.8 0.0018 Hypothalamus GAAGAAGTAG (6) 1.8 0.0018 Hypothalamus GAGGCTTTGG (10) 1.8 0.0018 E12.5 retina CCACACAGAT (5) 20.7 0.0207 E12.5 retina TATTAGTCTT (6) 18.8 0.0188 E12.5 retina GAGGCTTTGC (6) 5.6 0.0056 E12.5 retina AAAACTAAGG (4) 3.8 0.0038 E12.5 retina ATTTTTGTTT (16) 3.8 0.0038 E12.5 retina GAGGCTTTGG (10) 3.8 0.0038 E12.5 retina GAAGAAGTAG (6) 1.9 0.0019 E12.5 retina GCTTAGAAGT (4) 1.9 0.0019 E12.5 retina TTTGCTCTGG (5) 1.9 0.0019 E14.5 retina TATTAGTCTT (6) 20 0.02 E14.5 retina GCAGCAAAGA (5) 5.5 0.0055 E14.5 retina GAGGCTTTGC (6) 3.6 0.0036 E14.5 retina TTTGCTCTGG (5) 3.6 0.0036 E14.5 retina AAAACAGGAA (3) 1.8 0.0018 E14.5 retina AAAACTAAGG (4) 1.8 0.0018 E14.5 retina AAGGCTTTGG (5) 1.8 0.0018 E14.5 retina CAGAATTAAC (4) 1.8 0.0018 E14.5 retina CCACACAGAT (5) 1.8 0.0018 E14.5 retina GAAGAAGTAG (6) 1.8 0.0018 E14.5 retina GCTTAGAAGT (4) 1.8 0.0018 E14.5 retina GTGTTGCTGT (6) 1.8 0.0018 E16.5 retina TATTAGTCTT (6) 14.5 0.0145 E16.5 retina CCACACAGAT (5) 5.4 0.0054 E16.5 retina GAGGCTTTGC (6) 3.6 0.0036 E16.5 retina GCAGCAAAGA (5) 3.6 0.0036 E16.5 retina AAAACTAAGG (4) 1.8 0.0018 E16.5 retina ATTTTTGTTT (16) 1.8 0.0018 E16.5 retina GAAGAAGTAG (6) 1.8 0.0018 E16.5 retina GATAACTGTG (5) 1.8 0.0018 E16.5 retina TTTGCTCTGG (5) 1.8 0.0018 E18.5 retina CCACACAGAT (5) 20 0.02 E18.5 retina TATTAGTCTT (6) 10.9 0.0109 E18.5 retina CAGAATTAAC (4) 3.6 0.0036 E18.5 retina AAAACTAAGG (4) 1.8 0.0018 E18.5 retina AAGGCTTTGG (5) 1.8 0.0018 E18.5 retina ATTTTTGTTT (16) 1.8 0.0018 E18.5 retina GAGGCTTTGC (6) 1.8 0.0018 E18.5 retina GCTTAGAAGT (4) 1.8 0.0018 P0.5 retina CCACACAGAT (5) 5.9 0.0059 P0.5 retina TATTAGTCTT (6) 5.9 0.0059 P0.5 retina AAAACAGGAA (3) 3.9 0.0039 P0.5 retina GAGGCTTTGC (6) 3.9 0.0039 P0.5 retina AAAACTAAGG (4) 2 0.002 P0.5 retina GAAGAAGTAG (6) 2 0.002 P2.5 retina TATTAGTCTT (6) 15.8 0.0158 P2.5 retina GCTTAGAAGT (4) 10.6 0.0106 P2.5 retina CCACACAGAT (5) 3.5 0.0035 P2.5 retina AAGGCTTTGG (5) 1.8 0.0018 P4.5 retina TATTAGTCTT (6) 9.9 0.0099 P4.5 retina GCTTAGAAGT (4) 5.9 0.0059 P4.5 retina CCACACAGAT (5) 4 0.004 P4.5 retina AAAACAGGAA (3) 2 0.002 P4.5 retina ATTTTTGTTT (16) 2 0.002 P4.5 retina GAAGAAGTAG (6) 2 0.002 P4.5 retina GAGGCTTTGC (6) 2 0.002 P4.5 retina TTTGCTCTGG (5) 2 0.002 P6.5 retina CCACACAGAT (5) 16.7 0.0167 P6.5 retina TATTAGTCTT (6) 10 0.01 P6.5 retina AAGGCTTTGG (5) 3.3 0.0033 P6.5 retina ATTTTTGTTT (16) 1.7 0.0017 P6.5 retina GCAGCAAAGA (5) 1.7 0.0017 P6.5 retina GCTTAGAAGT (4) 1.7 0.0017 P6.5 retina TTTGCTCTGG (5) 1.7 0.0017 P10.5 crx- retina TATTAGTCTT (6) 61.3 0.0613 P10.5 crx- retina GAGGCTTTGC (6) 9.3 0.0093 P10.5 crx- retina CCACACAGAT (5) 7.4 0.0074 P10.5 crx- retina CCACAATCTG (4) 3.7 0.0037 P10.5 crx- retina AAAACTAAGG (4) 1.9 0.0019 P10.5 crx- retina AAGGCTTTGG (5) 1.9 0.0019 P10.5 crx- retina ATGATAAACT (6) 1.9 0.0019 P10.5 crx- retina ATTTTTGTTT (16) 1.9 0.0019 P10.5 crx- retina CTAACAGGAT (4) 1.9 0.0019 P10.5 crx- retina GATAACTGTG (5) 1.9 0.0019 P10.5 crx- retina GCAGCAAAGA (5) 1.9 0.0019 P10.5 crx- retina GCTTAGAAGT (4) 1.9 0.0019 P10.5 crx- retina TTTGCTCTGG (5) 1.9 0.0019 P10.5 crx+ retina CCACACAGAT (5) 26.9 0.0269 P10.5 crx+ retina TATTAGTCTT (6) 25 0.025 P10.5 crx+ retina ATTTTTGTTT (16) 5.8 0.0058 P10.5 crx+ retina CAGAATTAAC (4) 3.8 0.0038 P10.5 crx+ retina CTTTCGGAGA (4) 1.9 0.0019 P10.5 crx+ retina GAAGAAGTAG (6) 1.9 0.0019 P10.5 crx+ retina GAGGCTTTGG (10) 1.9 0.0019 P10.5 crx+ retina GTGTTGCTGT (6) 1.9 0.0019 Adult retinal TATTAGTCTT (6) 25.9 0.0259 Adult retinal CCACACAGAT (5) 5.6 0.0056 Adult retinal GAGGCTTTGC (6) 5.6 0.0056 Adult retinal TTTGCTCTGG (5) 3.7 0.0037 Adult retinal ATGATAAACT (6) 1.9 0.0019 Adult retinal ATTTTTGTTT (16) 1.9 0.0019 Adult retinal CAGAATTAAC (4) 1.9 0.0019 Adult retinal GAAGAAGTAG (6) 1.9 0.0019 ONL TATTAGTCTT (6) 46 0.046 ONL CCACACAGAT (5) 30.6 0.0306 ONL ATTTTTGTTT (16) 13.4 0.0134