Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301259	Tuba1	tubulin, alpha 1	15	15 F1 (15 60.4 cM)	22142
Gene Ontology	GTP binding | microtubule | microtubule-based movement | microtubule-based process | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	TUBA3[tubulin, alpha 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 189 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GCTTGCTGCC GTAGACAATG GTCACGATGT TCCTCACGGG TGCTGCCATT (2) TTGGCCAGGC 417.7 0.4177 Cb medulloblastoma CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAG (2) GTAGACAATG GTCACGATGT TCCTCACGGG 97 0.097 P8 GC+1d culture AGCAGCTTTC CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGTCCTAG (2) GCTTGCTGCC GGACATTTAA GGGATGGGCC GTAGACAATG GTCACGATGT GTTGCCCTAG TCCTCACGGG TGCTGCCATT (2) 586.5 0.5865 P8 GC+SHH+1d culture CACACAGCTC CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAG (2) GCTTGCTGCC GTAGACAATG GTCACGATGT TCCTCACGGG TGCTGCCATT (2) TTGGCCAGGC 430.9 0.4309 3T3 fibroblasts GCTGCCCTAG (2) GTAGACAATG TCCTCACGGG TGCTGCCATT (2) 326 0.326 E15 cortex CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTAGA GCTGTCCTAG (2) GCTTGCTGCC GGCTGCCCTA TGCTGCCATT (2) 2043.3 2.0433 P1 cortex CACACAGCTC CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTAGA GCTGCCTTAG (2) GCTGTCCTAG (2) GCTTGCTGCC GGCTGCCCTA GTCACGATGT GTTGCCCTAG TTTATTGTGT 1258.7 1.2587 Hypothalamus AGGAGGTGAG CCCTCACCCA (2) GAAAGGAGGG GCTGCCCTAG (2) GTAGACAATG TCCTCACGGG 57.9 0.0579 E12.5 retina GAAAGGAGGG GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGTCCTAG (2) GTCACGATGT TCCTCACGGG TGCCCCCGGG TGCCCCGGGA (2) TGCTGCCATT (2) 221.7 0.2217 E14.5 retina AGGAGGTGAG ATGAGCAACA CACACAGCTC CCCTCACCCA (2) GCTGCCCTAG (2) GGGATGGGCC GTAGACAATG GTGATGCTTC TCCTCACGGG TGCCCCGGGA (2) TGCTGCCATT (2) TTGGCCAGGC 143.7 0.1437 E16.5 retina AGCAGCTTTC AGGAGGTGAG CACACAGCTC CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTTGCTGCC GGCTGCCCTA GTAGACAATG TCCTCACGGG TGCCCCCGGG TGCTGCCATT (2) TTGGCCAGGC 190 0.19 E18.5 retina CCCTCACCCA (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GGGATGGGCC GTAGACAATG TCCTCACGGG TGCCCCCGGG TGCTGCCATT (2) TTGGCCAGGC TTTATTGTGT 188.9 0.1889 P0.5 retina CCCTCACCCA (2) GATGGAGATG (2) GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GCTTGCTGCC GGCTGCCCTA GGGATGGGCC GTAGACAATG GTCACGATGT TCCTCACGGG TGCTGCCATT (2) 402.6 0.4026 P2.5 retina GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GGACATTTAA GGCTGCCCTA GTAGACAATG GTCACGATGT GTTGCCCTAG TGCTGCCATT (2) 155.2 0.1552 P4.5 retina CACACAGCTC GATGGAGATG (2) GCTGCCCTAA (2) GCTGCCCTAG (2) GGACATTTAA GTCACGATGT TCCTCACGGG TGCTGCCATT (2) 123 0.123 P6.5 retina GAAAGGAGGG GATGGAGATG (2) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTAGA GCTTGCTGCC GTAGACAATG GTCACGATGT TCCTCACGGG TGCTGCCATT (2) 183.5 0.1835 P10.5 crx- retina AGGAGGTGAG GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GCTTGCTGCC GGCTGCCCTA GTAGACAATG TCCTCACGGG TGCCCCCGGG TTGGCCAGGC 399.7 0.3997 P10.5 crx+ retina AGCAGCTTTC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTTGCTGCC GTCACGATGT GTTGCCCTAG TTGGCCAGGC 192.1 0.1921 Adult retinal ATGAACACTG (9) ATGAGCAACA GCTGCCCTAG (2) GTAGACAATG GTTGCCCTAG 74.1 0.0741 ONL ATGAACACTG (9) ATGAGCAACA GCTGCCCTAG (2) GCTGCCTAGA GCTGTCCTAG (2) GTCACGATGT 49.7 0.0497