Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.303231	Cxcl12	chemokine (C-X-C motif) ligand 12	6	6 53.0 cM	20315
Gene Ontology	brain development | chemokine activity | chemotaxis | cytokine activity | extracellular | extracellular space | germ-cell development | germ-cell migration | growth factor activity | immune response | positive regulation of cell migration | regulation of cell migration | T-cell proliferation
Human Homolog	CXCL12[chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGTAAAAAA (2) 9.8 0.0098 P8 Cb GC CTGTAAACCT 4.9 0.0049 P8 Cb GC GACGCCAGGG (3) 3.3 0.0033 P8 Cb GC AAACAATTAG 1.6 0.0016 P8 Cb GC CTTCATCTGA (2) 1.6 0.0016 P8 Cb GC GCTCATTCAT (2) 1.6 0.0016 Cb medulloblastoma CTGTAAAAAA (2) 4.6 0.0046 Cb medulloblastoma TGTACACACA (8) 4.6 0.0046 Cb medulloblastoma GACGCCAGGG (3) 2.3 0.0023 P8 GC+1d culture GACGCCAGGG (3) 5.7 0.0057 P8 GC+1d culture CTGTAAAAAA (2) 2.3 0.0023 P8 GC+1d culture AAACAATTAG 1.1 0.0011 P8 GC+1d culture AAGCCACAGT 1.1 0.0011 P8 GC+1d culture AAGCCACCGT (3) 1.1 0.0011 P8 GC+1d culture ACCCTGAAAA (2) 1.1 0.0011 P8 GC+1d culture CTGTAAACCT 1.1 0.0011 P8 GC+1d culture GCTCATTCAT (2) 1.1 0.0011 P8 GC+SHH+1d culture CTGTAAAAAA (2) 9.4 0.0094 P8 GC+SHH+1d culture CTTCATCTGA (2) 8.2 0.0082 P8 GC+SHH+1d culture CTGTAAACCT 4.7 0.0047 P8 GC+SHH+1d culture GACGCCAGGG (3) 3.5 0.0035 P8 GC+SHH+1d culture GCTCATTCAT (2) 2.3 0.0023 P8 GC+SHH+1d culture AAACAATTAG 1.2 0.0012 P8 GC+SHH+1d culture AAGCCACAGT 1.2 0.0012 P8 GC+SHH+1d culture ACCCTGAAAA (2) 1.2 0.0012 3T3 fibroblasts GACGCCAGGG (3) 14 0.014 3T3 fibroblasts CTGTAAAAAA (2) 10.5 0.0105 3T3 fibroblasts CTGTAAACCT 10.5 0.0105 3T3 fibroblasts AAGCCACAGT 7 0.007 3T3 fibroblasts AAACAATTAG 3.5 0.0035 3T3 fibroblasts TCAGCTGCTT (3) 3.5 0.0035 E15 cortex CTTCATCTGA (2) 4.9 0.0049 E15 cortex GACGCCAGGG (3) 4.9 0.0049 P1 cortex GACGCCAGGG (3) 9.1 0.0091 P1 cortex TGTACACACA (8) 9.1 0.0091 Hypothalamus AAGCCACCGT (3) 1.8 0.0018 Hypothalamus CTGTAAAAAA (2) 1.8 0.0018 Hypothalamus CTGTAAACCT 1.8 0.0018 E12.5 retina CTTCATCTGA (2) 5.6 0.0056 E12.5 retina GACGCCAGGG (3) 3.8 0.0038 E12.5 retina GCTCATTCAT (2) 3.8 0.0038 E12.5 retina TCAGCTGCTT (3) 1.9 0.0019 E14.5 retina CTTCATCTGA (2) 7.3 0.0073 E14.5 retina AGGGCACAGG (2) 1.8 0.0018 E14.5 retina GACGCCAGGG (3) 1.8 0.0018 E16.5 retina CTTCATCTGA (2) 7.2 0.0072 E16.5 retina GACGCCAGGG (3) 1.8 0.0018 E18.5 retina CTTCATCTGA (2) 14.6 0.0146 E18.5 retina GACGCCAGGG (3) 1.8 0.0018 E18.5 retina TGTACACACA (8) 1.8 0.0018 P0.5 retina CTTCATCTGA (2) 7.9 0.0079 P0.5 retina GACGCCAGGG (3) 5.9 0.0059 P0.5 retina ACCCTGAAAA (2) 2 0.002 P0.5 retina GAAATGCCTG (5) 2 0.002 P0.5 retina TCAGCTGCTT (3) 2 0.002 P2.5 retina CTTCATCTGA (2) 14.1 0.0141 P2.5 retina GACGCCAGGG (3) 5.3 0.0053 P2.5 retina AGGGCACAGG (2) 1.8 0.0018 P4.5 retina CTTCATCTGA (2) 9.9 0.0099 P4.5 retina GACGCCAGGG (3) 4 0.004 P4.5 retina CTGTAAAAAA (2) 2 0.002 P4.5 retina GAAATGCCTG (5) 2 0.002 P6.5 retina GACGCCAGGG (3) 5 0.005 P6.5 retina CTTCATCTGA (2) 3.3 0.0033 P6.5 retina TGTACACACA (8) 3.3 0.0033 P10.5 crx- retina CTTCATCTGA (2) 7.4 0.0074 P10.5 crx- retina GACGCCAGGG (3) 7.4 0.0074 P10.5 crx- retina AAGCCACCGT (3) 1.9 0.0019 P10.5 crx- retina GCTCATTCAT (2) 1.9 0.0019 P10.5 crx+ retina CTTCATCTGA (2) 1.9 0.0019 P10.5 crx+ retina GACGCCAGGG (3) 1.9 0.0019 P10.5 crx+ retina GCTCATTCAT (2) 1.9 0.0019 P10.5 crx+ retina TGTACACACA (8) 1.9 0.0019 Adult retinal CTTCATCTGA (2) 3.7 0.0037 Adult retinal GACGCCAGGG (3) 1.9 0.0019 ONL AAGCCACAGT 1.9 0.0019 ONL AGGGCACAGG (2) 1.9 0.0019 ONL GACGCCAGGG (3) 1.9 0.0019 ONL TGTACACACA (8) 1.9 0.0019