Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.303231	Cxcl12	chemokine (C-X-C motif) ligand 12	6	6 53.0 cM	20315
Gene Ontology	brain development | chemokine activity | chemotaxis | cytokine activity | extracellular | extracellular space | germ-cell development | germ-cell migration | growth factor activity | immune response | positive regulation of cell migration | regulation of cell migration | T-cell proliferation
Human Homolog	CXCL12[chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 39 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGTAAAAAA (2) 9.8 0.0098 P8 Cb GC CTGTAAACCT 4.9 0.0049 P8 Cb GC AAACAATTAG 1.6 0.0016 P8 Cb GC CTTCATCTGA (2) 1.6 0.0016 Cb medulloblastoma CTGTAAAAAA (2) 4.6 0.0046 P8 GC+1d culture CTGTAAAAAA (2) 2.3 0.0023 P8 GC+1d culture AAACAATTAG 1.1 0.0011 P8 GC+1d culture AAGCCACAGT 1.1 0.0011 P8 GC+1d culture ACCCTGAAAA 1.1 0.0011 P8 GC+1d culture CTGTAAACCT 1.1 0.0011 P8 GC+SHH+1d culture CTGTAAAAAA (2) 9.4 0.0094 P8 GC+SHH+1d culture CTTCATCTGA (2) 8.2 0.0082 P8 GC+SHH+1d culture CTGTAAACCT 4.7 0.0047 P8 GC+SHH+1d culture AAACAATTAG 1.2 0.0012 P8 GC+SHH+1d culture AAGCCACAGT 1.2 0.0012 P8 GC+SHH+1d culture ACCCTGAAAA 1.2 0.0012 3T3 fibroblasts CTGTAAAAAA (2) 10.5 0.0105 3T3 fibroblasts CTGTAAACCT 10.5 0.0105 3T3 fibroblasts AAGCCACAGT 7 0.007 3T3 fibroblasts AAACAATTAG 3.5 0.0035 E15 cortex CTTCATCTGA (2) 4.9 0.0049 Hypothalamus CTGTAAAAAA (2) 1.8 0.0018 Hypothalamus CTGTAAACCT 1.8 0.0018 E12.5 retina CTTCATCTGA (2) 5.6 0.0056 E14.5 retina CTTCATCTGA (2) 7.3 0.0073 E16.5 retina CTTCATCTGA (2) 7.2 0.0072 E18.5 retina CTTCATCTGA (2) 14.6 0.0146 P0.5 retina CTTCATCTGA (2) 7.9 0.0079 P0.5 retina ACCCTGAAAA 2 0.002 P0.5 retina GAAATGCCTG 2 0.002 P2.5 retina CTTCATCTGA (2) 14.1 0.0141 P4.5 retina CTTCATCTGA (2) 9.9 0.0099 P4.5 retina CTGTAAAAAA (2) 2 0.002 P4.5 retina GAAATGCCTG 2 0.002 P6.5 retina CTTCATCTGA (2) 3.3 0.0033 P10.5 crx- retina CTTCATCTGA (2) 7.4 0.0074 P10.5 crx+ retina CTTCATCTGA (2) 1.9 0.0019 Adult retinal CTTCATCTGA (2) 3.7 0.0037 ONL AAGCCACAGT 1.9 0.0019