Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.316652	Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	13	13 49.0 cM	15357
Gene Ontology	biosynthesis | cholesterol biosynthesis | embryonic development | endoplasmic reticulum | hydroxymethylglutaryl-CoA reductase (NADPH) activity | hydroxymethylglutaryl-CoA reductase (NADPH) activity | integral to membrane | oxidoreductase activity
Human Homolog	HMGCR[3-hydroxy-3-methylglutaryl-Coenzyme A reductase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 170 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) CTGCCGCGGC GAAGATTACT (2) GAAGTGGCAG (2) GCACCACGTT GTGGTTCACA (2) TTTTGTACAA 34.1 0.0341 Cb medulloblastoma AAGACATCTG (2) CTGCCGCGGC GAAGATTACT (2) GAAGTGACAG (2) GCACCACGTT GGGCTGGGAA (3) GTGGTTCACA (2) TTTTGTACAA 41.5 0.0415 P8 GC+1d culture AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) CTGCCGCGGC GCACCACGTT GTGGTTCACA (2) TGGCTCCATC TTTTGTACAA 57.1 0.0571 P8 GC+SHH+1d culture AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GCACCACGTT GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC TTTTGTACAA 62.1 0.0621 3T3 fibroblasts AATGGCCCTG GAAGTGACAG (2) GTGGTTCACA (2) 28 0.028 E15 cortex AAGACATCTG (2) AATGGCCCTG ATCAGTGACA (2) CCTTTAGTCC (2) GAAGTGACAG (2) GTGGTTCACA (2) 44.3 0.0443 P1 cortex CCTTTAGTCC (2) GAAGTGACAG (2) GCACCACGTT GGGCTGGGAA (3) GTGGTTCACA (2) TGGCTCCATC TTTTGTACAA 81.7 0.0817 Hypothalamus AAGACATCTG (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGATTACT (2) GAAGTGACAG (2) GCACCACGTT GTGGTTCACA (2) TGGCTCCATC TTTTGTACAA 45.2 0.0452 E12.5 retina AAGACATCTG (2) AATGGCCCTG ATCAGTGACA (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GAAGTGGCAG (2) GTGGTTCACA (2) TCATTAAAGA (2) TTTTGTACAA 82.8 0.0828 E14.5 retina AAGACATCTG (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GCACCACGTT GGAGCCTCTT GGAGGCTCTT GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC TTTTGTACAA 132.9 0.1329 E16.5 retina AAGACATCTG (2) AATGGCCCTG ATCAGTGACA (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GAAGTGGCAG (2) GCACCACGTT GGAGCCTCTT GTGGTTCACA (2) TTTTGTACAA 106.6 0.1066 E18.5 retina AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) GAAGATTACT (2) GAAGTGACAG (2) GAAGTGGCAG (2) GCACCACGTT GTGGTTCACA (2) TCATTAAAGA (2) TTTTGTACAA 100 0.1 P0.5 retina AATGGCCCTG CCTTTAGTCC (2) GAAGTGACAG (2) GCACCACGTT GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC 76.6 0.0766 P2.5 retina AAGACATCTG (2) CCTTTAGTCC (2) GAAGTGACAG (2) GCACCACGTT GGAGGCTCTT GTGGTTCACA (2) TCATTAAAGA (2) TTTTGTACAA 52.8 0.0528 P4.5 retina AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) GAAGATTACT (2) GAAGTGACAG (2) GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC TTTTGTACAA 109.1 0.1091 P6.5 retina AAGACATCTG (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGATTACT (2) GAAGTGACAG (2) GCACCACGTT GGAGGCTCTT GTGGTTCACA (2) TCATTAAAGA (2) 81.6 0.0816 P10.5 crx- retina AAGACATCTG (2) CCTTTAGTCC (2) GAAGTGACAG (2) GAAGTGGCAG (2) GCACCACGTT GGAGGCTCTT GTGGTTCACA (2) TTTTGTACAA 72.6 0.0726 P10.5 crx+ retina AATGGCCCTG ATCAGTGACA (2) CCTTTAGTCC (2) CTGCCGCGGC GAAGATTACT (2) GAAGTGACAG (2) GAAGTGGCAG (2) GCACCACGTT GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC 76.8 0.0768 Adult retinal AAGACATCTG (2) AATGGCCCTG CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GTGGTTCACA (2) TGGCTCCATC TTTTGTACAA 57.6 0.0576 ONL AATGGCCCTG CCTTTAGTCC (2) CTGCCGCGGC GAAGTGACAG (2) GTGGTTCACA (2) TCATTAAAGA (2) TGGCTCCATC TTTTGTACAA 67.1 0.0671