Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.331113	Rps3a	ribosomal protein S3a	3		20091
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPS3A[ribosomal protein S3A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 282 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTTGCCCA ACGTCTTTGT AGCTTGCCCA ATCGAAGCTC GAAAGGAAAA GAAGCTGCCT GAGCTTTATG GCAAAGCAGC GGAAATTTAA GGGAAGGCAG GGGAAGGCGG GGGAAGGGGG (2) GGGAGGGCGG GGGGAAGGGC (2) GGGGAGGCGG GTCAAAAAAA 292 0.292 Cb medulloblastoma GAGCTTTATG GCAAAGCAGC GGGAAAGCGG GGGAAGGCAG GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGGGG (2) GGGAAGGTGG (2) GGGCTGGGAA (3) GTCAAAAAAA 171 0.171 P8 GC+1d culture AACTTGCCCA ACCCGAGAGG (2) CCCGAGAGTG (2) GAGCTGGAGG (2) GAGCTGGATG (2) GCAAAGCAGC GGGAAAGGCG (2) GGGAAGCCGG (2) GGGAAGGCAG GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GGGGAAGGGC (2) GTCAAAAAAA GTTCAAATAT TGATTGGTCT (2) 193.8 0.1938 P8 GC+SHH+1d culture AGCTTGCCCA CAAAAAAAGA CCCGAGAGTG (2) GAGAGGATAA GCAAAGCAGC GCGGTCGGCA GGAAATTTAA GGAAGCCGCT GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGGGG (2) GGGAAGGTGG (2) GGGAGGGCGG GGGGAAGGGC (2) GTCAAAAAAA GTTCAAATAT TGATTGGTCT (2) 207.4 0.2074 3T3 fibroblasts AACTTGCCCA GAGCTGGAGG (2) GAGCTGGATG (2) GGGAAAGGCG (2) GGGAAGGCAG GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGTGG (2) GGGGAAGGGC (2) GTAAAGAAGC GTATGGATTT 262.8 0.2628 E15 cortex ACGTCTTTGT CAAAAAAAGA CCCGAGAGTG (2) GCAAAGCAGC GGAAATTTAA GGAAGGCGGC GGGAAAGGGG GGGAAGGCGG GGGAAGGGGG (2) GGGGAAGGCG GTCAAAAAAA 311.3 0.3113 P1 cortex CCCGAGAGTG (2) GGGAAAGCGG GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGGGG (2) GGGCTGGGAA (3) GTAAAGAAGC GTCAAAAAAA 90.7 0.0907 Hypothalamus ACCCGAGAGG (2) ACGTCTTTGT AGCTTGCCCA CCCGAGAGTG (2) GAGAGGATAA GAGCTGGAGG (2) GAGCTTTATG GCAAAGCAGC GGAAGCCGCT GGAAGGCGGC GGGAAGGCGA GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GTATGGATTT GTCAAAAAAA TGATTGGTCT (2) 132 0.132 E12.5 retina AACTTGCCCA ACCCGAGAGG (2) CCCGAGAGTG (2) GAAGCTGCCT GAGAGGATAA GAGCTGGAGG (2) GCAAAGCAGC GCGGTCGGCA GGAAGCCGCT GGGAAAGGGG GGGAAGGCGG GGGAAGGGGG (2) GGGAGGGGGC (2) GGGGAAGGGC (2) GGGGAGGCGG GTCAAAAAAA TGATTGGTCT (2) 265.1 0.2651 E14.5 retina AACTTGCCCA ACCCGAGAGG (2) ACGTCTTTGT ATTTCCATCA CCCGAGAGTG (2) GAAAGGAAAA GAGAGGATAA GAGCTTTATG GCAAAGCAGC GGAAATTTAA GGGAAGGCGG GGGAAGGGGG (2) GGGGAAGGCG GGGGAAGGGC (2) GTCAAAAAAA TGATTGGTCT (2) TTCAATATTA (11) 223.9 0.2239 E16.5 retina AACTTGCCCA ACCCGAGAGG (2) ACGTCTTTGT AGCTTGCCCA ATCGAAGCTC ATTTCCATCA GAGAGGATAA GAGCTGGAGG (2) GCAAAGCAGC GGAAGGCGGC GGGAAAGGGG GGGAAGGCGA GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GGGGAAGGCG GGGGAAGGGC (2) GTCAAAAAAA TGATTGGTCT (2) TTCAATATTA (11) 354.8 0.3548 E18.5 retina AACTTGCCCA AGCTTGCCCA GAAAGGAAAA GAAGCTGCCT GAGAGGATAA GAGCTGGATG (2) GAGCTTTATG GCAAAGCAGC GGAAGCCGCT GGGAAAGCGG GGGAAGGCAG GGGAAGGCGG GGGGAAGGGC (2) GTCAAAAAAA TGATTGGTCT (2) 225.4 0.2254 P0.5 retina AACTTGCCCA ACCCGAGAGG (2) AGCTTGCCCA ATCGAAGCTC GAGCTTTATG GCAAAGCAGC GGAAGCCGCT GGAAGGCGGC GGGAAAGCGG GGGAAAGGCG (2) GGGAAGCCGG (2) GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGGGG (2) GGGAAGGTGG (2) GGGGAAGGCG GGGGAAGGGC (2) GTCAAAAAAA GTTCAAATAT 277.2 0.2772 P2.5 retina AACTTGCCCA GAGAGGATAA GCAAAGCAGC GGAAGCCGCT GGGAAAGGCG (2) GGGAAGCCGG (2) GGGAAGGCGG GGGAAGGGGC (2) GGGAAGGGGG (2) GGGAAGGTGG (2) GGGAGGGCGG GGGAGGGGGC (2) GGGGAAGGGC (2) GTAAAGAAGC GTCAAAAAAA TGATTGGTCT (2) 176.3 0.1763 P4.5 retina ACGTCTTTGT AGCTTGCCCA GAGAGGATAA GAGCTGGAGG (2) GAGCTTTATG GCAAAGCAGC GGAAGGCGGC GGGAAGGCAG GGGAAGGCGG GGGAAGGGGG (2) GGGAGGGGGC (2) GGGGAAGGGC (2) GTCAAAAAAA TGATTGGTCT (2) 176.5 0.1765 P6.5 retina AACTTGCCCA CCCGAGAGTG (2) GAGAGGATAA GAGCTTTATG GCAAAGCAGC GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GGGGAAGGCG GGGGAAGGGC (2) GGGGAGGCGG GTCAAAAAAA GTCAAGAAGA 108.5 0.1085 P10.5 crx- retina ATTTCCATCA CCCGAGAGTG (2) GAGCTGGAGG (2) GAGCTTTATG GGAAATTTAA GGGAAAGCGG GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GGGGAAGGGC (2) GTCAAAAAAA TGATTGGTCT (2) 174.8 0.1748 P10.5 crx+ retina AACTTGCCCA ATCGAAGCTC GAGCTTTATG GCAAAGCAGC GGGAAGCCGG (2) GGGAAGGCGG GGGAAGGGGG (2) GGGGAAGGGC (2) GTCAAAAAAA GTCAAGAAGA 178.7 0.1787 Adult retinal ACGTCTTTGT CCCGAGAGTG (2) GAAAGGAAAA GGGAAAGGCG (2) GGGAAGGCAG GGGAAGGCGG GGGAAGGGGG (2) GGGGAAGGCG GGGGAAGGGC (2) GTCAAAAAAA GTCAAGAAGA TGATTGGTCT (2) 102.1 0.1021 ONL AACTTGCCCA ACCCGAGAGG (2) CCCGAGAGTG (2) GGGAAGGCGG GGGAAGGGGG (2) GGGAAGGTGG (2) GGGAGGGGGC (2) GGGGAAGGGC (2) GTCAAAAAAA GTCAAGAAGA TGATTGGTCT (2) 59.2 0.0592