Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.331113	Rps3a	ribosomal protein S3a	3		20091
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPS3A[ribosomal protein S3A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 282 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAAGGCGG (11) 213.7 0.2137 P8 Cb GC GCAAAGCAGC (5) 39.2 0.0392 P8 Cb GC GGGAAGGGGG (23) 4.9 0.0049 P8 Cb GC GGGGAAGGGC (16) 4.9 0.0049 P8 Cb GC GTCAAAAAAA (15) 4.9 0.0049 P8 Cb GC ACGTCTTTGT 3.3 0.0033 P8 Cb GC ATCGAAGCTC 3.3 0.0033 P8 Cb GC GAAGCTGCCT (4) 3.3 0.0033 P8 Cb GC GAGCTTTATG (2) 3.3 0.0033 P8 Cb GC AACTTGCCCA 1.6 0.0016 P8 Cb GC AGCTTGCCCA (2) 1.6 0.0016 P8 Cb GC GAAAGGAAAA (6) 1.6 0.0016 P8 Cb GC GGAAATTTAA (2) 1.6 0.0016 P8 Cb GC GGGAAGGCAG (5) 1.6 0.0016 P8 Cb GC GGGAGGGCGG (3) 1.6 0.0016 P8 Cb GC GGGGAGGCGG (5) 1.6 0.0016 Cb medulloblastoma GGGAAGGCGG (11) 122.6 0.1226 Cb medulloblastoma GGGAAGGGGG (23) 13.9 0.0139 Cb medulloblastoma GCAAAGCAGC (5) 9.2 0.0092 Cb medulloblastoma GTCAAAAAAA (15) 6.9 0.0069 Cb medulloblastoma GGGAAAGCGG (14) 4.6 0.0046 Cb medulloblastoma GGGCTGGGAA (10) 4.6 0.0046 Cb medulloblastoma GAGCTTTATG (2) 2.3 0.0023 Cb medulloblastoma GGGAAGGCAG (5) 2.3 0.0023 Cb medulloblastoma GGGAAGGGGC (6) 2.3 0.0023 Cb medulloblastoma GGGAAGGTGG (6) 2.3 0.0023 P8 GC+1d culture GGGAAGGCGG (11) 132.4 0.1324 P8 GC+1d culture GCAAAGCAGC (5) 20.5 0.0205 P8 GC+1d culture GTCAAAAAAA (15) 12.6 0.0126 P8 GC+1d culture GGGAAGGCAG (5) 5.7 0.0057 P8 GC+1d culture GGGAAGGGGG (23) 4.6 0.0046 P8 GC+1d culture GTTCAAATAT (2) 3.4 0.0034 P8 GC+1d culture AACTTGCCCA 2.3 0.0023 P8 GC+1d culture GGGGAAGGGC (16) 2.3 0.0023 P8 GC+1d culture TGATTGGTCT (5) 2.3 0.0023 P8 GC+1d culture ACCCGAGAGG (14) 1.1 0.0011 P8 GC+1d culture CCCGAGAGTG (3) 1.1 0.0011 P8 GC+1d culture GAGCTGGAGG (10) 1.1 0.0011 P8 GC+1d culture GAGCTGGATG (3) 1.1 0.0011 P8 GC+1d culture GGGAAAGGCG (14) 1.1 0.0011 P8 GC+1d culture GGGAAGCCGG (3) 1.1 0.0011 P8 GC+1d culture GGGAAGGTGG (6) 1.1 0.0011 P8 GC+SHH+1d culture GGGAAGGCGG (11) 145.2 0.1452 P8 GC+SHH+1d culture GCAAAGCAGC (5) 24.6 0.0246 P8 GC+SHH+1d culture GTCAAAAAAA (15) 15.2 0.0152 P8 GC+SHH+1d culture GCGGTCGGCA (12) 3.5 0.0035 P8 GC+SHH+1d culture CCCGAGAGTG (3) 2.3 0.0023 P8 GC+SHH+1d culture GGGAAGGGGG (23) 2.3 0.0023 P8 GC+SHH+1d culture GTTCAAATAT (2) 2.3 0.0023 P8 GC+SHH+1d culture AGCTTGCCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture CAAAAAAAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture GAGAGGATAA (12) 1.2 0.0012 P8 GC+SHH+1d culture GGAAATTTAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGAAGCCGCT (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAGGGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAGGTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGGGCGG (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGGAAGGGC (16) 1.2 0.0012 P8 GC+SHH+1d culture TGATTGGTCT (5) 1.2 0.0012 3T3 fibroblasts GGGAAGGCGG (11) 213.8 0.2138 3T3 fibroblasts GGGAAGGGGC (6) 14 0.014 3T3 fibroblasts GAGCTGGAGG (10) 7 0.007 3T3 fibroblasts AACTTGCCCA 3.5 0.0035 3T3 fibroblasts GAGCTGGATG (3) 3.5 0.0035 3T3 fibroblasts GGGAAAGGCG (14) 3.5 0.0035 3T3 fibroblasts GGGAAGGCAG (5) 3.5 0.0035 3T3 fibroblasts GGGAAGGTGG (6) 3.5 0.0035 3T3 fibroblasts GGGGAAGGGC (16) 3.5 0.0035 3T3 fibroblasts GTAAAGAAGC (10) 3.5 0.0035 3T3 fibroblasts GTATGGATTT (13) 3.5 0.0035 E15 cortex GGGAAGGCGG (11) 197.9 0.1979 E15 cortex GCAAAGCAGC (5) 34.6 0.0346 E15 cortex GTCAAAAAAA (15) 24.7 0.0247 E15 cortex GGGAAGGGGG (23) 14.8 0.0148 E15 cortex CAAAAAAAGA (7) 9.9 0.0099 E15 cortex ACGTCTTTGT 4.9 0.0049 E15 cortex CCCGAGAGTG (3) 4.9 0.0049 E15 cortex GGAAATTTAA (2) 4.9 0.0049 E15 cortex GGAAGGCGGC (4) 4.9 0.0049 E15 cortex GGGAAAGGGG (17) 4.9 0.0049 E15 cortex GGGGAAGGCG (13) 4.9 0.0049 P1 cortex GGGAAGGCGG (11) 36.4 0.0364 P1 cortex GTCAAAAAAA (15) 22.7 0.0227 P1 cortex GGGAAGGGGG (23) 9.1 0.0091 P1 cortex CCCGAGAGTG (3) 4.5 0.0045 P1 cortex GGGAAAGCGG (14) 4.5 0.0045 P1 cortex GGGAAGGGGC (6) 4.5 0.0045 P1 cortex GGGCTGGGAA (10) 4.5 0.0045 P1 cortex GTAAAGAAGC (10) 4.5 0.0045 Hypothalamus GGGAAGGCGG (11) 88.7 0.0887 Hypothalamus GCAAAGCAGC (5) 9.1 0.0091 Hypothalamus GTCAAAAAAA (15) 5.4 0.0054 Hypothalamus ACCCGAGAGG (14) 3.6 0.0036 Hypothalamus GGGAAGGGGG (23) 3.6 0.0036 Hypothalamus ACGTCTTTGT 1.8 0.0018 Hypothalamus AGCTTGCCCA (2) 1.8 0.0018 Hypothalamus CCCGAGAGTG (3) 1.8 0.0018 Hypothalamus GAGAGGATAA (12) 1.8 0.0018 Hypothalamus GAGCTGGAGG (10) 1.8 0.0018 Hypothalamus GAGCTTTATG (2) 1.8 0.0018 Hypothalamus GGAAGCCGCT (3) 1.8 0.0018 Hypothalamus GGAAGGCGGC (4) 1.8 0.0018 Hypothalamus GGGAAGGCGA 1.8 0.0018 Hypothalamus GGGAAGGTGG (6) 1.8 0.0018 Hypothalamus GTATGGATTT (13) 1.8 0.0018 Hypothalamus TGATTGGTCT (5) 1.8 0.0018 E12.5 retina GGGAAGGCGG (11) 210.3 0.2103 E12.5 retina CCCGAGAGTG (3) 9.4 0.0094 E12.5 retina GCAAAGCAGC (5) 9.4 0.0094 E12.5 retina GGGGAAGGGC (16) 5.6 0.0056 E12.5 retina ACCCGAGAGG (14) 3.8 0.0038 E12.5 retina GGAAGCCGCT (3) 3.8 0.0038 E12.5 retina GGGAAAGGGG (17) 3.8 0.0038 E12.5 retina AACTTGCCCA 1.9 0.0019 E12.5 retina GAAGCTGCCT (4) 1.9 0.0019 E12.5 retina GAGAGGATAA (12) 1.9 0.0019 E12.5 retina GAGCTGGAGG (10) 1.9 0.0019 E12.5 retina GCGGTCGGCA (12) 1.9 0.0019 E12.5 retina GGGAAGGGGG (23) 1.9 0.0019 E12.5 retina GGGAGGGGGC (4) 1.9 0.0019 E12.5 retina GGGGAGGCGG (5) 1.9 0.0019 E12.5 retina GTCAAAAAAA (15) 1.9 0.0019 E12.5 retina TGATTGGTCT (5) 1.9 0.0019 E14.5 retina GGGAAGGCGG (11) 149.4 0.1494 E14.5 retina GAGAGGATAA (12) 16.4 0.0164 E14.5 retina GCAAAGCAGC (5) 14.6 0.0146 E14.5 retina GTCAAAAAAA (15) 10.9 0.0109 E14.5 retina ATTTCCATCA (11) 5.5 0.0055 E14.5 retina GGGGAAGGGC (16) 5.5 0.0055 E14.5 retina GAGCTTTATG (2) 3.6 0.0036 E14.5 retina AACTTGCCCA 1.8 0.0018 E14.5 retina ACCCGAGAGG (14) 1.8 0.0018 E14.5 retina ACGTCTTTGT 1.8 0.0018 E14.5 retina CCCGAGAGTG (3) 1.8 0.0018 E14.5 retina GAAAGGAAAA (6) 1.8 0.0018 E14.5 retina GGAAATTTAA (2) 1.8 0.0018 E14.5 retina GGGAAGGGGG (23) 1.8 0.0018 E14.5 retina GGGGAAGGCG (13) 1.8 0.0018 E14.5 retina TGATTGGTCT (5) 1.8 0.0018 E14.5 retina TTCAATATTA (11) 1.8 0.0018 E16.5 retina GGGAAGGCGG (11) 260.8 0.2608 E16.5 retina ACGTCTTTGT 14.5 0.0145 E16.5 retina GCAAAGCAGC (5) 12.7 0.0127 E16.5 retina GTCAAAAAAA (15) 10.9 0.0109 E16.5 retina TTCAATATTA (11) 10.9 0.0109 E16.5 retina ACCCGAGAGG (14) 5.4 0.0054 E16.5 retina ATCGAAGCTC 5.4 0.0054 E16.5 retina GAGAGGATAA (12) 5.4 0.0054 E16.5 retina GGGAAGGCGA 5.4 0.0054 E16.5 retina GGGGAAGGGC (16) 5.4 0.0054 E16.5 retina AACTTGCCCA 1.8 0.0018 E16.5 retina AGCTTGCCCA (2) 1.8 0.0018 E16.5 retina ATTTCCATCA (11) 1.8 0.0018 E16.5 retina GAGCTGGAGG (10) 1.8 0.0018 E16.5 retina GGAAGGCGGC (4) 1.8 0.0018 E16.5 retina GGGAAAGGGG (17) 1.8 0.0018 E16.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina GGGAAGGTGG (6) 1.8 0.0018 E16.5 retina GGGGAAGGCG (13) 1.8 0.0018 E16.5 retina TGATTGGTCT (5) 1.8 0.0018 E18.5 retina GGGAAGGCGG (11) 141.9 0.1419 E18.5 retina GTCAAAAAAA (15) 30.9 0.0309 E18.5 retina GCAAAGCAGC (5) 20 0.02 E18.5 retina AACTTGCCCA 5.5 0.0055 E18.5 retina GGGGAAGGGC (16) 5.5 0.0055 E18.5 retina GAAAGGAAAA (6) 3.6 0.0036 E18.5 retina GAGAGGATAA (12) 3.6 0.0036 E18.5 retina AGCTTGCCCA (2) 1.8 0.0018 E18.5 retina GAAGCTGCCT (4) 1.8 0.0018 E18.5 retina GAGCTGGATG (3) 1.8 0.0018 E18.5 retina GAGCTTTATG (2) 1.8 0.0018 E18.5 retina GGAAGCCGCT (3) 1.8 0.0018 E18.5 retina GGGAAAGCGG (14) 1.8 0.0018 E18.5 retina GGGAAGGCAG (5) 1.8 0.0018 E18.5 retina TGATTGGTCT (5) 1.8 0.0018 P0.5 retina GGGAAGGCGG (11) 210 0.21 P0.5 retina GCAAAGCAGC (5) 15.7 0.0157 P0.5 retina GGGGAAGGGC (16) 7.9 0.0079 P0.5 retina GTCAAAAAAA (15) 7.9 0.0079 P0.5 retina AACTTGCCCA 3.9 0.0039 P0.5 retina ACCCGAGAGG (14) 3.9 0.0039 P0.5 retina GGGAAGGTGG (6) 3.9 0.0039 P0.5 retina AGCTTGCCCA (2) 2 0.002 P0.5 retina ATCGAAGCTC 2 0.002 P0.5 retina GAGCTTTATG (2) 2 0.002 P0.5 retina GGAAGCCGCT (3) 2 0.002 P0.5 retina GGAAGGCGGC (4) 2 0.002 P0.5 retina GGGAAAGCGG (14) 2 0.002 P0.5 retina GGGAAAGGCG (14) 2 0.002 P0.5 retina GGGAAGCCGG (3) 2 0.002 P0.5 retina GGGAAGGGGC (6) 2 0.002 P0.5 retina GGGAAGGGGG (23) 2 0.002 P0.5 retina GGGGAAGGCG (13) 2 0.002 P0.5 retina GTTCAAATAT (2) 2 0.002 P2.5 retina GGGAAGGCGG (11) 109.1 0.1091 P2.5 retina GCAAAGCAGC (5) 14.1 0.0141 P2.5 retina GGGGAAGGGC (16) 10.6 0.0106 P2.5 retina GTCAAAAAAA (15) 10.6 0.0106 P2.5 retina GGGAAGGGGG (23) 5.3 0.0053 P2.5 retina GGGAAGCCGG (3) 3.5 0.0035 P2.5 retina GGGAAGGGGC (6) 3.5 0.0035 P2.5 retina GGGAAGGTGG (6) 3.5 0.0035 P2.5 retina TGATTGGTCT (5) 3.5 0.0035 P2.5 retina AACTTGCCCA 1.8 0.0018 P2.5 retina GAGAGGATAA (12) 1.8 0.0018 P2.5 retina GGAAGCCGCT (3) 1.8 0.0018 P2.5 retina GGGAAAGGCG (14) 1.8 0.0018 P2.5 retina GGGAGGGCGG (3) 1.8 0.0018 P2.5 retina GGGAGGGGGC (4) 1.8 0.0018 P2.5 retina GTAAAGAAGC (10) 1.8 0.0018 P4.5 retina GGGAAGGCGG (11) 124.8 0.1248 P4.5 retina GCAAAGCAGC (5) 17.8 0.0178 P4.5 retina GGGAAGGGGG (23) 7.9 0.0079 P4.5 retina GAGAGGATAA (12) 4 0.004 P4.5 retina GGGGAAGGGC (16) 4 0.004 P4.5 retina ACGTCTTTGT 2 0.002 P4.5 retina AGCTTGCCCA (2) 2 0.002 P4.5 retina GAGCTGGAGG (10) 2 0.002 P4.5 retina GAGCTTTATG (2) 2 0.002 P4.5 retina GGAAGGCGGC (4) 2 0.002 P4.5 retina GGGAAGGCAG (5) 2 0.002 P4.5 retina GGGAGGGGGC (4) 2 0.002 P4.5 retina GTCAAAAAAA (15) 2 0.002 P4.5 retina TGATTGGTCT (5) 2 0.002 P6.5 retina GGGAAGGCGG (11) 56.7 0.0567 P6.5 retina GGGAAGGGGG (23) 15 0.015 P6.5 retina GTCAAAAAAA (15) 10 0.01 P6.5 retina GGGGAAGGGC (16) 8.3 0.0083 P6.5 retina AACTTGCCCA 3.3 0.0033 P6.5 retina GCAAAGCAGC (5) 3.3 0.0033 P6.5 retina CCCGAGAGTG (3) 1.7 0.0017 P6.5 retina GAGAGGATAA (12) 1.7 0.0017 P6.5 retina GAGCTTTATG (2) 1.7 0.0017 P6.5 retina GGGAAGGTGG (6) 1.7 0.0017 P6.5 retina GGGGAAGGCG (13) 1.7 0.0017 P6.5 retina GGGGAGGCGG (5) 1.7 0.0017 P6.5 retina GTCAAGAAGA (4) 1.7 0.0017 P10.5 crx- retina GGGAAGGCGG (11) 118.9 0.1189 P10.5 crx- retina GGGGAAGGGC (16) 13 0.013 P10.5 crx- retina GGGAAGGGGG (23) 11.1 0.0111 P10.5 crx- retina GAGCTTTATG (2) 9.3 0.0093 P10.5 crx- retina GAGCTGGAGG (10) 5.6 0.0056 P10.5 crx- retina CCCGAGAGTG (3) 3.7 0.0037 P10.5 crx- retina GTCAAAAAAA (15) 3.7 0.0037 P10.5 crx- retina ATTTCCATCA (11) 1.9 0.0019 P10.5 crx- retina GGAAATTTAA (2) 1.9 0.0019 P10.5 crx- retina GGGAAAGCGG (14) 1.9 0.0019 P10.5 crx- retina GGGAAGGTGG (6) 1.9 0.0019 P10.5 crx- retina TGATTGGTCT (5) 1.9 0.0019 P10.5 crx+ retina GGGAAGGCGG (11) 132.7 0.1327 P10.5 crx+ retina GGGGAAGGGC (16) 13.5 0.0135 P10.5 crx+ retina GGGAAGGGGG (23) 11.5 0.0115 P10.5 crx+ retina GTCAAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina AACTTGCCCA 3.8 0.0038 P10.5 crx+ retina GTCAAGAAGA (4) 3.8 0.0038 P10.5 crx+ retina ATCGAAGCTC 1.9 0.0019 P10.5 crx+ retina GAGCTTTATG (2) 1.9 0.0019 P10.5 crx+ retina GCAAAGCAGC (5) 1.9 0.0019 P10.5 crx+ retina GGGAAGCCGG (3) 1.9 0.0019 Adult retinal GGGAAGGCGG (11) 44.4 0.0444 Adult retinal GTCAAGAAGA (4) 18.5 0.0185 Adult retinal GGGAAGGGGG (23) 11.1 0.0111 Adult retinal GTCAAAAAAA (15) 7.4 0.0074 Adult retinal GGGGAAGGGC (16) 5.6 0.0056 Adult retinal TGATTGGTCT (5) 3.7 0.0037 Adult retinal ACGTCTTTGT 1.9 0.0019 Adult retinal CCCGAGAGTG (3) 1.9 0.0019 Adult retinal GAAAGGAAAA (6) 1.9 0.0019 Adult retinal GGGAAAGGCG (14) 1.9 0.0019 Adult retinal GGGAAGGCAG (5) 1.9 0.0019 Adult retinal GGGGAAGGCG (13) 1.9 0.0019 ONL GGGAAGGCGG (11) 23 0.023 ONL GTCAAGAAGA (4) 11.5 0.0115 ONL ACCCGAGAGG (14) 5.7 0.0057 ONL GGGAGGGGGC (4) 3.8 0.0038 ONL TGATTGGTCT (5) 3.8 0.0038 ONL AACTTGCCCA 1.9 0.0019 ONL CCCGAGAGTG (3) 1.9 0.0019 ONL GGGAAGGGGG (23) 1.9 0.0019 ONL GGGAAGGTGG (6) 1.9 0.0019 ONL GGGGAAGGGC (16) 1.9 0.0019 ONL GTCAAAAAAA (15) 1.9 0.0019