Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.333399	LOC380687	similar to glyceraldehyde-3-phosphate dehydrogenase	4		380687
Mm.333399	Gapd	glyceraldehyde-3-phosphate dehydrogenase	6	6 56.0 cM	407972
Mm.333399	LOC14433	similar to glyceraldehyde-3-phosphate dehydrogenase	2		14433
Human Homolog	GAPD[glyceraldehyde-3-phosphate dehydrogenase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 157 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTCCAAGG (14) 78.3 0.0783 P8 Cb GC TTCCAGCTAC (4) 9.8 0.0098 P8 Cb GC TTTGTGATGG (7) 6.5 0.0065 P8 Cb GC GCCTTCCGTG (16) 4.9 0.0049 P8 Cb GC TTCCAGTATG (5) 4.9 0.0049 P8 Cb GC AGGTCCACCA (7) 3.3 0.0033 P8 Cb GC TACGACGAGT (4) 3.3 0.0033 P8 Cb GC CCATCACTGC (9) 1.6 0.0016 P8 Cb GC GTCTCCAAGG (5) 1.6 0.0016 Cb medulloblastoma GCCTCCAAGG (14) 120.2 0.1202 Cb medulloblastoma TTTGTGATGG (7) 9.2 0.0092 Cb medulloblastoma GAGAAGGCCG (10) 6.9 0.0069 Cb medulloblastoma GCCTTCCGTG (16) 6.9 0.0069 Cb medulloblastoma CCATCACTGC (9) 4.6 0.0046 Cb medulloblastoma GTGGTGAAGA (8) 4.6 0.0046 Cb medulloblastoma TTCCAGCTAC (4) 4.6 0.0046 Cb medulloblastoma AGGTCCACCA (7) 2.3 0.0023 Cb medulloblastoma TAGTTGAGGT (6) 2.3 0.0023 Cb medulloblastoma TTCCAGTATG (5) 2.3 0.0023 P8 GC+1d culture GCCTCCAAGG (14) 99.3 0.0993 P8 GC+1d culture TTCCAGCTAC (4) 8 0.008 P8 GC+1d culture AGGTCCACCA (7) 2.3 0.0023 P8 GC+1d culture GCCTCCAGGG (6) 2.3 0.0023 P8 GC+1d culture GCCTTCCGTG (16) 1.1 0.0011 P8 GC+1d culture GCTTCCAAGG (7) 1.1 0.0011 P8 GC+1d culture TACGACGAGT (4) 1.1 0.0011 P8 GC+1d culture TTCCAGTATG (5) 1.1 0.0011 P8 GC+1d culture TTTGTGATGG (7) 1.1 0.0011 P8 GC+SHH+1d culture GCCTCCAAGG (14) 146.4 0.1464 P8 GC+SHH+1d culture TTCCAGCTAC (4) 9.4 0.0094 P8 GC+SHH+1d culture TACGACGAGT (4) 3.5 0.0035 P8 GC+SHH+1d culture GCCTTCCGTG (16) 2.3 0.0023 P8 GC+SHH+1d culture GTCTCCAAGG (5) 2.3 0.0023 P8 GC+SHH+1d culture ACCTCCAAGG (5) 1.2 0.0012 P8 GC+SHH+1d culture AGGTCCACCA (7) 1.2 0.0012 P8 GC+SHH+1d culture GTGGTGAAGA (8) 1.2 0.0012 P8 GC+SHH+1d culture TAGTTGAGGT (6) 1.2 0.0012 3T3 fibroblasts GCCTCCAAGG (14) 452.1 0.4521 3T3 fibroblasts GCTCCAAGGA (8) 10.5 0.0105 3T3 fibroblasts GCCTCCAGGG (6) 7 0.007 3T3 fibroblasts GCCTCCCAAG (6) 7 0.007 3T3 fibroblasts ACCTCCAAGG (5) 3.5 0.0035 3T3 fibroblasts GCCTTCCGTG (16) 3.5 0.0035 3T3 fibroblasts GTGGTGAAGA (8) 3.5 0.0035 3T3 fibroblasts TTCCAGCTAC (4) 3.5 0.0035 E15 cortex GCCTCCAAGG (14) 133.6 0.1336 E15 cortex TACGACGAGT (4) 9.9 0.0099 E15 cortex GAGAAGGCCG (10) 4.9 0.0049 E15 cortex TTCCAGTATG (5) 4.9 0.0049 E15 cortex TTTGTGATGG (7) 4.9 0.0049 P1 cortex GCCTCCAAGG (14) 122.7 0.1227 P1 cortex GCTCCAAGGA (8) 4.5 0.0045 P1 cortex TACGACGAGT (4) 4.5 0.0045 Hypothalamus GCCTCCAAGG (14) 74.3 0.0743 Hypothalamus GCCTTCCGTG (16) 7.2 0.0072 Hypothalamus AGGTCCACCA (7) 5.4 0.0054 Hypothalamus CCAGTGAGCT (6) 5.4 0.0054 Hypothalamus TAGTTGAGGT (6) 3.6 0.0036 Hypothalamus TTCCAGTATG (5) 3.6 0.0036 Hypothalamus ACCTTCCTGT (5) 1.8 0.0018 Hypothalamus TTCCAGCTAC (4) 1.8 0.0018 Hypothalamus TTTGTGATGG (7) 1.8 0.0018 E12.5 retina GCCTCCAAGG (14) 236.5 0.2365 E12.5 retina TAGTTGAGGT (6) 13.1 0.0131 E12.5 retina TTCCAGCTAC (4) 7.5 0.0075 E12.5 retina ACCTTCCTGT (5) 1.9 0.0019 E12.5 retina CCAGTGAGCT (6) 1.9 0.0019 E12.5 retina CCATCACTGC (9) 1.9 0.0019 E12.5 retina TTTGTGATGG (7) 1.9 0.0019 E14.5 retina GCCTCCAAGG (14) 40.1 0.0401 E14.5 retina TTCCACTATG (4) 14.6 0.0146 E14.5 retina TTCCAGCTAC (4) 10.9 0.0109 E14.5 retina AGGTCCACCA (7) 3.6 0.0036 E14.5 retina TTTGTGATGG (7) 3.6 0.0036 E14.5 retina CCATCACTGC (9) 1.8 0.0018 E14.5 retina GTGGTGAAGA (8) 1.8 0.0018 E14.5 retina TTCCAGTATG (5) 1.8 0.0018 E16.5 retina GCCTCCAAGG (14) 83.3 0.0833 E16.5 retina TTCCAGCTAC (4) 10.9 0.0109 E16.5 retina AGGTCCACCA (7) 5.4 0.0054 E16.5 retina GCCTTCCGTG (16) 5.4 0.0054 E16.5 retina TTTGTGATGG (7) 5.4 0.0054 E16.5 retina CCATCACTGC (9) 3.6 0.0036 E16.5 retina CCAGTGAGCT (6) 1.8 0.0018 E16.5 retina GAGAAGGCCG (10) 1.8 0.0018 E18.5 retina GCCTCCAAGG (14) 105.5 0.1055 E18.5 retina AGGTCCACCA (7) 7.3 0.0073 E18.5 retina TTCCAGCTAC (4) 7.3 0.0073 E18.5 retina GTGGTGAAGA (8) 3.6 0.0036 E18.5 retina TAGTTGAGGT (6) 3.6 0.0036 E18.5 retina CCATCACTGC (9) 1.8 0.0018 E18.5 retina TTCCACTATG (4) 1.8 0.0018 E18.5 retina TTTGTGATGG (7) 1.8 0.0018 P0.5 retina GCCTCCAAGG (14) 239.4 0.2394 P0.5 retina TTCCAGCTAC (4) 5.9 0.0059 P0.5 retina GCCTTCCGTG (16) 3.9 0.0039 P0.5 retina ACCTCCAAGG (5) 2 0.002 P0.5 retina CCAGTGAGCT (6) 2 0.002 P0.5 retina CCATCACTGC (9) 2 0.002 P0.5 retina GCCTCCCAAG (6) 2 0.002 P0.5 retina GTCTCCAAGG (5) 2 0.002 P0.5 retina GTGGTGAAGA (8) 2 0.002 P0.5 retina TACGACGAGT (4) 2 0.002 P2.5 retina GCCTCCAAGG (14) 176 0.176 P2.5 retina TTCCAGCTAC (4) 8.8 0.0088 P2.5 retina GAGAAGGCCG (10) 1.8 0.0018 P2.5 retina GTGGTGAAGA (8) 1.8 0.0018 P4.5 retina GCCTCCAAGG (14) 91.1 0.0911 P4.5 retina TTCCAGCTAC (4) 19.8 0.0198 P4.5 retina ACCTCCAAGG (5) 2 0.002 P4.5 retina GTGGTGAAGA (8) 2 0.002 P4.5 retina TAGTTGAGGT (6) 2 0.002 P4.5 retina TTCCAGTATG (5) 2 0.002 P4.5 retina TTTGTGATGG (7) 2 0.002 P6.5 retina GCCTCCAAGG (14) 153.4 0.1534 P6.5 retina TTCCAGCTAC (4) 15 0.015 P6.5 retina AGGTCCACCA (7) 5 0.005 P6.5 retina GCCTCCAGGG (6) 3.3 0.0033 P6.5 retina CCATCACTGC (9) 1.7 0.0017 P6.5 retina GTGGTGAAGA (8) 1.7 0.0017 P6.5 retina TAGTTGAGGT (6) 1.7 0.0017 P10.5 crx- retina GCCTCCAAGG (14) 341.8 0.3418 P10.5 crx- retina AGGTCCACCA (7) 7.4 0.0074 P10.5 crx- retina TTTGTGATGG (7) 7.4 0.0074 P10.5 crx- retina GCCTTCCGTG (16) 5.6 0.0056 P10.5 crx- retina TTCCAGCTAC (4) 5.6 0.0056 P10.5 crx- retina ACCTTCCTGT (5) 1.9 0.0019 P10.5 crx- retina GCTTCCAAGG (7) 1.9 0.0019 P10.5 crx- retina GTGGTGAAGA (8) 1.9 0.0019 P10.5 crx- retina TACGACGAGT (4) 1.9 0.0019 P10.5 crx- retina TAGTTGAGGT (6) 1.9 0.0019 P10.5 crx+ retina GCCTCCAAGG (14) 265.3 0.2653 P10.5 crx+ retina TTCCAGCTAC (4) 13.5 0.0135 P10.5 crx+ retina AGGTCCACCA (7) 3.8 0.0038 P10.5 crx+ retina CCATCACTGC (9) 1.9 0.0019 P10.5 crx+ retina GTGGTGAAGA (8) 1.9 0.0019 P10.5 crx+ retina TACGACGAGT (4) 1.9 0.0019 P10.5 crx+ retina TTCCAGTATG (5) 1.9 0.0019 Adult retinal GCCTCCAAGG (14) 327.7 0.3277 Adult retinal TTCCAGCTAC (4) 11.1 0.0111 Adult retinal GCCTTCCGTG (16) 7.4 0.0074 Adult retinal AGGTCCACCA (7) 5.6 0.0056 Adult retinal CCAGTGAGCT (6) 3.7 0.0037 Adult retinal CCATCACTGC (9) 3.7 0.0037 Adult retinal TAGTTGAGGT (6) 3.7 0.0037 Adult retinal GCTTCCAAGG (7) 1.9 0.0019 Adult retinal TACGACGAGT (4) 1.9 0.0019 Adult retinal TTTGTGATGG (7) 1.9 0.0019 ONL GCCTCCAAGG (14) 352.4 0.3524 ONL TTCCAGCTAC (4) 13.4 0.0134 ONL AGGTCCACCA (7) 1.9 0.0019 ONL GCCTCCCAAG (6) 1.9 0.0019 ONL GCCTTCCGTG (16) 1.9 0.0019 ONL GCTTCCAAGG (7) 1.9 0.0019 ONL GTGGTGAAGA (8) 1.9 0.0019 ONL TACGACGAGT (4) 1.9 0.0019 ONL TTCCACTATG (4) 1.9 0.0019