Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.334841	AA516637	expressed sequence AA516637	8		101955
Mm.334841	AA682107	expressed sequence AA682107	8		101973
Mm.334841	Cdh13	cadherin 13	8	8 64.0 cM	12554
Gene Ontology	calcium ion binding | cell adhesion | extracellular space | homophilic cell adhesion | membrane | plasma membrane | protein binding
Human Homolog	CDH13[cadherin 13, H-cadherin (heart)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 177 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAAAAAAA (28) 55.5 0.0555 P8 Cb GC ACCCAGGCTG (5) 8.2 0.0082 P8 Cb GC CTCTCTGTGG (5) 4.9 0.0049 P8 Cb GC GTCAGTTCTA (4) 4.9 0.0049 P8 Cb GC TTTGTGCCAC (9) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CTCATCCGGC (4) 3.3 0.0033 P8 Cb GC AGCACCTGGG (5) 1.6 0.0016 P8 Cb GC ATGGGGAAGT (4) 1.6 0.0016 P8 Cb GC GGTGGCTTCC (4) 1.6 0.0016 Cb medulloblastoma GTAAAAAAAA (28) 129.5 0.1295 Cb medulloblastoma TGTGGGTAAT (5) 4.6 0.0046 Cb medulloblastoma ACCCAGGCTG (5) 2.3 0.0023 Cb medulloblastoma ATGGGGAAGT (4) 2.3 0.0023 Cb medulloblastoma CCTGCGTCCT (3) 2.3 0.0023 Cb medulloblastoma CTCATCCGGC (4) 2.3 0.0023 Cb medulloblastoma GTGTACCTAT (3) 2.3 0.0023 Cb medulloblastoma TACACACGCA (5) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture GTAAAAAAAA (28) 74.2 0.0742 P8 GC+1d culture ACCCAGGCTG (5) 19.4 0.0194 P8 GC+1d culture CTCATCCGGC (4) 18.3 0.0183 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTCAGTTCTA (4) 11.4 0.0114 P8 GC+1d culture CTCTCTGTGG (5) 4.6 0.0046 P8 GC+1d culture AGCAGTCGGA (3) 1.1 0.0011 P8 GC+1d culture TGTGGGTAAT (5) 1.1 0.0011 P8 GC+SHH+1d culture GTAAAAAAAA (28) 132.3 0.1323 P8 GC+SHH+1d culture CTCATCCGGC (4) 8.2 0.0082 P8 GC+SHH+1d culture GTCAGTTCTA (4) 8.2 0.0082 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture ACCCAGGCTG (5) 4.7 0.0047 P8 GC+SHH+1d culture TGTGGGTAAT (5) 3.5 0.0035 P8 GC+SHH+1d culture GGAAAAAGGA (12) 2.3 0.0023 P8 GC+SHH+1d culture ACTAGTGCTT (80) 1.2 0.0012 P8 GC+SHH+1d culture CTCTCTGTGG (5) 1.2 0.0012 P8 GC+SHH+1d culture TACACACGCA (5) 1.2 0.0012 3T3 fibroblasts ACCCAGGCTG (5) 42.1 0.0421 3T3 fibroblasts CTCTCTGTGG (5) 21 0.021 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CTCATCCGGC (4) 7 0.007 3T3 fibroblasts GTAAAAAAAA (28) 7 0.007 3T3 fibroblasts ATGGGCAGGT (5) 3.5 0.0035 3T3 fibroblasts TACACACGCA (5) 3.5 0.0035 E15 cortex GTAAAAAAAA (28) 34.6 0.0346 E15 cortex GTCAGTTCTA (4) 9.9 0.0099 E15 cortex ACCCAGGCTG (5) 4.9 0.0049 E15 cortex ATGGGGAAGT (4) 4.9 0.0049 E15 cortex CTCATCCGGC (4) 4.9 0.0049 E15 cortex CTCTCTGTGG (5) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GTAAAAAAAA (28) 36.4 0.0364 P1 cortex ACCCAGGCTG (5) 4.5 0.0045 P1 cortex CTCATCCGGC (4) 4.5 0.0045 P1 cortex CTCTCTGTGG (5) 4.5 0.0045 P1 cortex TACACACGCA (5) 4.5 0.0045 P1 cortex TCTCCTTTCT (8) 4.5 0.0045 P1 cortex TGTGGGTAAT (5) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GTAAAAAAAA (28) 99.6 0.0996 Hypothalamus ACCCAGGCTG (5) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus AGCACCTGGG (5) 3.6 0.0036 Hypothalamus CTCATCCGGC (4) 3.6 0.0036 Hypothalamus TACACACGCA (5) 3.6 0.0036 Hypothalamus TGTGGGTAAT (5) 3.6 0.0036 Hypothalamus CAAAACTCTG (5) 1.8 0.0018 Hypothalamus GTCAGTTCTA (4) 1.8 0.0018 Hypothalamus GTGTACCTAT (3) 1.8 0.0018 E12.5 retina GTAAAAAAAA (28) 41.3 0.0413 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ACCCAGGCTG (5) 5.6 0.0056 E12.5 retina GTCAGTTCTA (4) 3.8 0.0038 E12.5 retina ACTAGTGCTT (80) 1.9 0.0019 E12.5 retina ATGGGGAAGT (4) 1.9 0.0019 E12.5 retina CTCATCCGGC (4) 1.9 0.0019 E12.5 retina CTCTCTGTGG (5) 1.9 0.0019 E14.5 retina GTAAAAAAAA (28) 82 0.082 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CCTGCGTCCT (3) 7.3 0.0073 E14.5 retina TCTCCTTTCT (8) 3.6 0.0036 E14.5 retina ATGGGGAAGT (4) 1.8 0.0018 E14.5 retina GGAAAAAGGA (12) 1.8 0.0018 E14.5 retina GGTGGCTTCC (4) 1.8 0.0018 E14.5 retina TACACACGCA (5) 1.8 0.0018 E16.5 retina GTAAAAAAAA (28) 68.8 0.0688 E16.5 retina ACCCAGGCTG (5) 7.2 0.0072 E16.5 retina ATGGGGAAGT (4) 7.2 0.0072 E16.5 retina CCTGCGTCCT (3) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TACACACGCA (5) 3.6 0.0036 E18.5 retina GTAAAAAAAA (28) 189.2 0.1892 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTCAGTTCTA (4) 5.5 0.0055 E18.5 retina ACCCAGGCTG (5) 3.6 0.0036 E18.5 retina ATGGGGAAGT (4) 1.8 0.0018 E18.5 retina CAAAACTCTG (5) 1.8 0.0018 E18.5 retina CCTGCGTCCT (3) 1.8 0.0018 P0.5 retina GTAAAAAAAA (28) 51 0.051 P0.5 retina ACCCAGGCTG (5) 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CTCATCCGGC (4) 7.9 0.0079 P0.5 retina CTCTCTGTGG (5) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGCAGTCGGA (3) 2 0.002 P0.5 retina ATGGGCAGGT (5) 2 0.002 P0.5 retina TACACACGCA (5) 2 0.002 P2.5 retina GTAAAAAAAA (28) 103.8 0.1038 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CTCATCCGGC (4) 3.5 0.0035 P2.5 retina TGTGGGTAAT (5) 3.5 0.0035 P2.5 retina ACCCAGGCTG (5) 1.8 0.0018 P2.5 retina CAAAACTCTG (5) 1.8 0.0018 P2.5 retina CTCTCTGTGG (5) 1.8 0.0018 P2.5 retina GTCAGTTCTA (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GTAAAAAAAA (28) 142.7 0.1427 P4.5 retina ACCCAGGCTG (5) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CCTGCGTCCT (3) 7.9 0.0079 P4.5 retina GTCAGTTCTA (4) 5.9 0.0059 P4.5 retina TGTGGGTAAT (5) 5.9 0.0059 P4.5 retina CTCTCTGTGG (5) 4 0.004 P4.5 retina ACTAGTGCTT (80) 2 0.002 P4.5 retina ATGGGGAAGT (4) 2 0.002 P4.5 retina CTCATCCGGC (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GTAAAAAAAA (28) 66.7 0.0667 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina ACCCAGGCTG (5) 6.7 0.0067 P6.5 retina GTCAGTTCTA (4) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CCTGCGTCCT (3) 1.7 0.0017 P6.5 retina GGTGGCTTCC (4) 1.7 0.0017 P6.5 retina GTGTACCTAT (3) 1.7 0.0017 P6.5 retina TACACACGCA (5) 1.7 0.0017 P6.5 retina TCTCCTTTCT (8) 1.7 0.0017 P10.5 crx- retina ACCCAGGCTG (5) 31.6 0.0316 P10.5 crx- retina GTAAAAAAAA (28) 26 0.026 P10.5 crx- retina CTCATCCGGC (4) 24.2 0.0242 P10.5 crx- retina GTCAGTTCTA (4) 9.3 0.0093 P10.5 crx- retina TACACACGCA (5) 5.6 0.0056 P10.5 crx- retina AGCAGTCGGA (3) 3.7 0.0037 P10.5 crx- retina AGCACCTGGG (5) 1.9 0.0019 P10.5 crx- retina ATGGGCAGGT (5) 1.9 0.0019 P10.5 crx- retina CCTGCGTCCT (3) 1.9 0.0019 P10.5 crx- retina TCTCCTTTCT (8) 1.9 0.0019 P10.5 crx+ retina GTAAAAAAAA (28) 55.8 0.0558 P10.5 crx+ retina ACCCAGGCTG (5) 5.8 0.0058 P10.5 crx+ retina CTCATCCGGC (4) 5.8 0.0058 P10.5 crx+ retina TGTGGGTAAT (5) 5.8 0.0058 P10.5 crx+ retina CCTGCGTCCT (3) 3.8 0.0038 P10.5 crx+ retina TACACACGCA (5) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CTCTCTGTGG (5) 1.9 0.0019 P10.5 crx+ retina GTCAGTTCTA (4) 1.9 0.0019 Adult retinal GTAAAAAAAA (28) 22.2 0.0222 Adult retinal ACCCAGGCTG (5) 11.1 0.0111 Adult retinal CTCATCCGGC (4) 9.3 0.0093 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CTCTCTGTGG (5) 5.6 0.0056 Adult retinal GTCAGTTCTA (4) 3.7 0.0037 Adult retinal CCTGCGTCCT (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGTGGGTAAT (5) 1.9 0.0019 ONL GTAAAAAAAA (28) 24.9 0.0249 ONL CTCATCCGGC (4) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL CTCTCTGTGG (5) 3.8 0.0038 ONL GTCAGTTCTA (4) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL ACCCAGGCTG (5) 1.9 0.0019 ONL TACACACGCA (5) 1.9 0.0019 ONL TCTCCTTTCT (8) 1.9 0.0019 ONL TGTGGGTAAT (5) 1.9 0.0019 ONL TTTGTGCCAC (9) 1.9 0.0019