Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.335096	Pvrl1	poliovirus receptor-related 1	9		58235
Gene Ontology	cell adhesion | cell-cell adherens junction | extracellular space | integral to membrane | integral to membrane | protein binding | receptor activity
Human Homolog	PVRL1[poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCTCCTCC (5) 3.3 0.0033 Cb medulloblastoma ATGCTCCTCC (5) 4.6 0.0046 Cb medulloblastoma AGGAGGAAGA (14) 2.3 0.0023 Cb medulloblastoma CCCCCCCCCC (20) 2.3 0.0023 P8 GC+1d culture ATGCTCCTCC (5) 3.4 0.0034 P8 GC+1d culture CCCCCCCCCC (20) 2.3 0.0023 P8 GC+1d culture TACATCTGTG (6) 1.1 0.0011 P8 GC+SHH+1d culture ATGCTCCTCC (5) 5.9 0.0059 P8 GC+SHH+1d culture CCCCCCCCCC (20) 1.2 0.0012 3T3 fibroblasts TACATCTGTG (6) 3.5 0.0035 E15 cortex AGGAGGAAGA (14) 4.9 0.0049 E15 cortex CAGCCCTGGG (12) 4.9 0.0049 E15 cortex CCCCCCCCCC (20) 4.9 0.0049 P1 cortex AGGAGGAAGA (14) 4.5 0.0045 P1 cortex GTTTCTCAGA (4) 4.5 0.0045 P1 cortex TACATCTGTG (6) 4.5 0.0045 Hypothalamus ATGCTCCTCC (5) 1.8 0.0018 E12.5 retina ATGCTCCTCC (5) 5.6 0.0056 E12.5 retina GTTTCTCAGA (4) 1.9 0.0019 E14.5 retina ATGCTCCTCC (5) 5.5 0.0055 E16.5 retina ATGCTCCTCC (5) 14.5 0.0145 E18.5 retina AGGAGGAAGA (14) 1.8 0.0018 E18.5 retina ATGCTCCTCC (5) 1.8 0.0018 P0.5 retina ATGCTCCTCC (5) 7.9 0.0079 P2.5 retina ATGCTCCTCC (5) 3.5 0.0035 P2.5 retina CAGCCCTGGG (12) 1.8 0.0018 P2.5 retina CCCCCCCCCC (20) 1.8 0.0018 P2.5 retina TACATCTGTG (6) 1.8 0.0018 P4.5 retina ATGCTCCTCC (5) 4 0.004 P6.5 retina ATGCTCCTCC (5) 8.3 0.0083 P6.5 retina AGGAGGAAGA (14) 1.7 0.0017 P6.5 retina TACATCTGTG (6) 1.7 0.0017 P10.5 crx- retina TACATCTGTG (6) 7.4 0.0074 P10.5 crx- retina AGGAGGAAGA (14) 1.9 0.0019 P10.5 crx- retina ATGCTCCTCC (5) 1.9 0.0019 P10.5 crx- retina CAGCCCTGGG (12) 1.9 0.0019 P10.5 crx+ retina ATGCTCCTCC (5) 5.8 0.0058 P10.5 crx+ retina CCCCCCCCCC (20) 1.9 0.0019 ONL ATGCTCCTCC (5) 3.8 0.0038 ONL GTTTCTCAGA (4) 3.8 0.0038 ONL AGGAGGAAGA (14) 1.9 0.0019 ONL TACATCTGTG (6) 1.9 0.0019