Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.34456
2400003N08Rik
RIKEN cDNA 2400003N08 gene
5
71954
Human Homolog
SDS3[likely ortholog of mouse Sds3]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 39 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACCATCATT
GCCCTCTTGC
GGGCAGGGTT
(
5
)
6.5
0.0065
Cb medulloblastoma
GGGCAGGGTT
(
5
)
9.2
0.0092
P8 GC+1d culture
CTTCCGGGCC
GAGGACCTGA
(
2
)
GCCCTCTTGC
GGGCAGGGTT
(
5
)
17
0.017
P8 GC+SHH+1d culture
GCCCTCTTGC
GGGCAGGGTT
(
5
)
5.9
0.0059
3T3 fibroblasts
GCCCTCTTGC
GGGCAGGGTT
(
5
)
7
0.007
P1 cortex
GCCCTCTTGC
GGGCAGGGTT
(
5
)
9
0.009
Hypothalamus
GGGCAGGGTT
(
5
)
3.6
0.0036
E12.5 retina
CACCATCATT
GGGCAGGGTT
(
5
)
3.8
0.0038
E14.5 retina
GCCCTCTTGC
5.5
0.0055
E16.5 retina
GCCCTCTTGC
GGGCAGGGTT
(
5
)
9
0.009
E18.5 retina
GCCCTCTTGC
GGGCAGGGTT
(
5
)
16.3
0.0163
P0.5 retina
GCCCTCTTGC
GGGCAGGGTT
(
5
)
7.9
0.0079
P2.5 retina
CTTCCGGGCC
GCCCTCTTGC
GGGCAGGGTT
(
5
)
10.6
0.0106
P4.5 retina
GGGCAGGGTT
(
5
)
9.9
0.0099
P6.5 retina
CTTCCGGGCC
GCCCTCTTGC
GGGCAGGGTT
(
5
)
11.7
0.0117
P10.5 crx- retina
GAGGACCTGA
(
2
)
GGGCAGGGTT
(
5
)
7.4
0.0074
P10.5 crx+ retina
GCCCTCTTGC
3.8
0.0038
Adult retinal
GCCCTCTTGC
GGGCAGGGTT
(
5
)
16.7
0.0167
ONL
GAGGACCTGA
(
2
)
GCCCTCTTGC
GGGCAGGGTT
(
5
)
9.5
0.0095
