Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.345443	Rps13	ribosomal protein S13	7		68052
Gene Ontology	cytosolic small ribosomal subunit (sensu Eukarya) | intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | RNA binding | structural constituent of ribosome
Human Homolog	RPS13[ribosomal protein S13]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 90 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCGCACG (61) 13.1 0.0131 P8 Cb GC CACGCTCCCG (2) 4.9 0.0049 P8 Cb GC ATGGCGGAGG (3) 3.3 0.0033 P8 Cb GC TAGAAAAAAA (8) 3.3 0.0033 P8 Cb GC TGTGTGTGCT (8) 1.6 0.0016 Cb medulloblastoma GGGTGGCCCA (8) 16.2 0.0162 Cb medulloblastoma GTGGCGCACG (61) 6.9 0.0069 Cb medulloblastoma CACGCTCCCG (2) 4.6 0.0046 Cb medulloblastoma GGTGGGGGGC (7) 2.3 0.0023 Cb medulloblastoma TAGAAAAAAA (8) 2.3 0.0023 P8 GC+1d culture CACGCTCCCG (2) 13.7 0.0137 P8 GC+1d culture GTGGCGCACG (61) 6.8 0.0068 P8 GC+1d culture TAGAAAAAAA (8) 5.7 0.0057 P8 GC+1d culture ATGGCGGAGG (3) 2.3 0.0023 P8 GC+1d culture AGGGACTCAC (2) 1.1 0.0011 P8 GC+1d culture GTTGAATGAA 1.1 0.0011 P8 GC+SHH+1d culture CACGCTCCCG (2) 12.9 0.0129 P8 GC+SHH+1d culture TAGAAAAAAA (8) 3.5 0.0035 P8 GC+SHH+1d culture AGGGACTCAC (2) 2.3 0.0023 P8 GC+SHH+1d culture ATGGCGGAGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCGCACG (61) 2.3 0.0023 P8 GC+SHH+1d culture GGTGGGGGGC (7) 1.2 0.0012 P8 GC+SHH+1d culture GTGGTGATGA (2) 1.2 0.0012 3T3 fibroblasts CACGCTCCCG (2) 101.6 0.1016 3T3 fibroblasts GTGGCGCACG (61) 63.1 0.0631 3T3 fibroblasts GTGGTGATGA (2) 3.5 0.0035 E15 cortex GTGGCGCACG (61) 113.8 0.1138 E15 cortex CACGCTCCCG (2) 54.4 0.0544 P1 cortex CACGCTCCCG (2) 22.7 0.0227 P1 cortex GTGGCGCACG (61) 18.2 0.0182 P1 cortex GTGGTGATGA (2) 4.5 0.0045 Hypothalamus CACGCTCCCG (2) 5.4 0.0054 Hypothalamus GTGGCGCACG (61) 3.6 0.0036 Hypothalamus TAGAAAAAAA (8) 3.6 0.0036 Hypothalamus TGTTTGGGAG (2) 1.8 0.0018 E12.5 retina ATGGCGGAGG (3) 13.1 0.0131 E12.5 retina CACGCTCCCG (2) 11.3 0.0113 E12.5 retina GTGGCGCACG (61) 11.3 0.0113 E14.5 retina GTGGCGCACG (61) 29.2 0.0292 E14.5 retina ATGGCGGAGG (3) 3.6 0.0036 E14.5 retina CACGCTCCCG (2) 1.8 0.0018 E14.5 retina TAGAAAAAAA (8) 1.8 0.0018 E16.5 retina GTGGCGCACG (61) 25.4 0.0254 E16.5 retina ATGGCGGAGG (3) 3.6 0.0036 E16.5 retina AGGGACTCAC (2) 1.8 0.0018 E16.5 retina CACGCTCCCG (2) 1.8 0.0018 E16.5 retina TGTGTGTGCT (8) 1.8 0.0018 E18.5 retina GTGGCGCACG (61) 10.9 0.0109 E18.5 retina ATGGCGGAGG (3) 7.3 0.0073 E18.5 retina CACGCTCCCG (2) 3.6 0.0036 E18.5 retina GTTGAATGAA 1.8 0.0018 P0.5 retina GTGGCGCACG (61) 25.5 0.0255 P0.5 retina CACGCTCCCG (2) 23.6 0.0236 P0.5 retina ATGGCGGAGG (3) 13.7 0.0137 P0.5 retina TAGAAAAAAA (8) 2 0.002 P2.5 retina GTGGCGCACG (61) 17.6 0.0176 P2.5 retina AGGGACTCAC (2) 3.5 0.0035 P2.5 retina CACGCTCCCG (2) 3.5 0.0035 P2.5 retina CTTAAACTTA (2) 3.5 0.0035 P2.5 retina ATGGCGGAGG (3) 1.8 0.0018 P4.5 retina GTGGCGCACG (61) 17.8 0.0178 P4.5 retina CACGCTCCCG (2) 4 0.004 P4.5 retina ATGGCGGAGG (3) 2 0.002 P4.5 retina CACGCTCCCA (3) 2 0.002 P4.5 retina GGTGGGGGGC (7) 2 0.002 P4.5 retina GTGGTGATGA (2) 2 0.002 P6.5 retina GTGGCGCACG (61) 38.3 0.0383 P6.5 retina CACGCTCCCG (2) 8.3 0.0083 P6.5 retina ATGGCGGAGG (3) 1.7 0.0017 P6.5 retina TGTGTGTGCT (8) 1.7 0.0017 P10.5 crx- retina GGGTGGCCCA (8) 50.2 0.0502 P10.5 crx- retina GTGGCGCACG (61) 13 0.013 P10.5 crx- retina ATGGCGGAGG (3) 1.9 0.0019 P10.5 crx- retina CTTAAACTTA (2) 1.9 0.0019 P10.5 crx- retina TAGAAAAAAA (8) 1.9 0.0019 P10.5 crx+ retina GGGTGGCCCA (8) 57.7 0.0577 P10.5 crx+ retina GTGGCGCACG (61) 32.7 0.0327 P10.5 crx+ retina AGGGACTCAC (2) 1.9 0.0019 P10.5 crx+ retina ATGGCGGAGG (3) 1.9 0.0019 Adult retinal GTGGCGCACG (61) 22.2 0.0222 Adult retinal CACGCTCCCG (2) 13 0.013 Adult retinal CACGCTCCCA (3) 3.7 0.0037 Adult retinal GTTGAATGAA 1.9 0.0019 ONL GTGGCGCACG (61) 23 0.023 ONL CACGCTCCCG (2) 11.5 0.0115 ONL GGGTGGCCCA (8) 5.7 0.0057 ONL TGTTTGGGAG (2) 3.8 0.0038 ONL ATGGCGGAGG (3) 1.9 0.0019 ONL TAGAAAAAAA (8) 1.9 0.0019 ONL TGTGTGTGCT (8) 1.9 0.0019