Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.37371	Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	4	4 76.5 cM	18822
Gene Ontology	endoplasmic reticulum | extracellular space | membrane | oxidoreductase activity | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | procollagen-lysine 5-dioxygenase activity | protein metabolism
Human Homolog	PLOD[procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 28 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTTCTTCTG (4) GTGCTCCCAC 14.7 0.0147 Cb medulloblastoma GCTTCTTCTG (4) 23.1 0.0231 P8 GC+1d culture GCTTCTTCTG (4) GGCAGCCCCA (2) 12.5 0.0125 P8 GC+SHH+1d culture GCTTCTTCTG (4) GTGCTCCCAC 11.7 0.0117 3T3 fibroblasts GCTTCTTCTG (4) GTGCTCCCAC 14 0.014 E15 cortex GCTTCTTCTG (4) GGCAGCCCCA (2) 9.8 0.0098 P1 cortex GCTTCTTCTG (4) 4.5 0.0045 Hypothalamus GCTTCTTCTG (4) 7.2 0.0072 E12.5 retina GCTTCTTCTG (4) 5.6 0.0056 E14.5 retina GCTTCTTCTG (4) 5.5 0.0055 E16.5 retina GCTTCTTCTG (4) 12.7 0.0127 E18.5 retina GCTTCTTCTG (4) 10.9 0.0109 P0.5 retina GCTTCTTCTG (4) 3.9 0.0039 P2.5 retina GCTTCTTCTG (4) 14.1 0.0141 P4.5 retina GCTTCTTCTG (4) 11.9 0.0119 P6.5 retina GCTTCTTCTG (4) GTGCTCCCAC 18.4 0.0184 P10.5 crx- retina GCTTCTTCTG (4) 3.7 0.0037 P10.5 crx+ retina GCTTCTTCTG (4) GGCAGCCCCA (2) 15.4 0.0154 Adult retinal GCTTCTTCTG (4) GTGCTCCCAC 3.8 0.0038 ONL GCTTCTTCTG (4) 7.7 0.0077