Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.38016	Srebf2	sterol regulatory element binding factor 2	15	15 E1 (15 48.5 cM)	20788
Gene Ontology	cholesterol metabolism | DNA binding | DNA binding | endoplasmic reticulum | Golgi apparatus | integral to membrane | lipid metabolism | nucleus | nucleus | protein binding | regulation of transcription | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SREBF2[sterol regulatory element binding transcription factor 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGCTGGACGT (2) 17.9 0.0179 P8 Cb GC CTTCTCCTCA (3) 1.6 0.0016 Cb medulloblastoma TGCTGGACGT (2) 16.2 0.0162 Cb medulloblastoma GAGACCCTCA (2) 2.3 0.0023 Cb medulloblastoma GTGCTGAAGC (2) 2.3 0.0023 P8 GC+1d culture TGCTGGACGT (2) 51.4 0.0514 P8 GC+1d culture GGCAGAGCTC (2) 5.7 0.0057 P8 GC+1d culture CTTCTCCTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture TGCTGGACGT (2) 45.7 0.0457 P8 GC+SHH+1d culture GGCAGAGCTC (2) 5.9 0.0059 P8 GC+SHH+1d culture GTGAATGTTT 2.3 0.0023 P8 GC+SHH+1d culture AGGGAGGAGG 1.2 0.0012 3T3 fibroblasts GGCAGAGCTC (2) 7 0.007 3T3 fibroblasts GCACACTGCA 3.5 0.0035 3T3 fibroblasts GTGCTGAAGC (2) 3.5 0.0035 3T3 fibroblasts TGCTGGACGT (2) 3.5 0.0035 E15 cortex TGCTGGACGT (2) 9.9 0.0099 P1 cortex TGCTGGACGT (2) 9.1 0.0091 Hypothalamus GCACACTGCA 1.8 0.0018 Hypothalamus TGCTGGACGT (2) 1.8 0.0018 E12.5 retina TGCTGGACGT (2) 18.8 0.0188 E14.5 retina TGCTGGACGT (2) 12.8 0.0128 E14.5 retina AGGGAGGAGG 1.8 0.0018 E14.5 retina GGCAGAGCTC (2) 1.8 0.0018 E16.5 retina TGCTGGACGT (2) 19.9 0.0199 E16.5 retina CTTCTCCTCA (3) 5.4 0.0054 E16.5 retina GTGAATGTTT 1.8 0.0018 E16.5 retina GTGCTGAAGC (2) 1.8 0.0018 E16.5 retina TGGGGAGCTT 1.8 0.0018 E18.5 retina TGCTGGACGT (2) 21.8 0.0218 E18.5 retina GTGCTGAAGC (2) 1.8 0.0018 P0.5 retina TGCTGGACGT (2) 9.8 0.0098 P0.5 retina TGGGGAGCTT 3.9 0.0039 P0.5 retina AGGGAGGAGG 2 0.002 P0.5 retina GTGCTGAAGC (2) 2 0.002 P2.5 retina TGCTGGACGT (2) 22.9 0.0229 P2.5 retina GTGCTGAAGC (2) 3.5 0.0035 P4.5 retina TGCTGGACGT (2) 9.9 0.0099 P4.5 retina GTGCTGAAGC (2) 4 0.004 P6.5 retina TGCTGGACGT (2) 8.3 0.0083 P6.5 retina GTGCTGAAGC (2) 5 0.005 P6.5 retina GCACACTGCA 1.7 0.0017 P10.5 crx- retina TGCTGGACGT (2) 9.3 0.0093 P10.5 crx- retina GTGAATGTTT 1.9 0.0019 P10.5 crx- retina GTGCTGAAGC (2) 1.9 0.0019 P10.5 crx+ retina TGCTGGACGT (2) 3.8 0.0038 P10.5 crx+ retina GGCAGAGCTC (2) 1.9 0.0019 P10.5 crx+ retina GTGCTGAAGC (2) 1.9 0.0019 Adult retinal TGCTGGACGT (2) 3.7 0.0037 ONL GCACACTGCA 1.9 0.0019 ONL TGCTGGACGT (2) 1.9 0.0019