Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3815	Sdc4	syndecan 4	2	2 94.0 cM	20971
Gene Ontology	cytoskeletal protein binding | extracellular space | integral to membrane | membrane
Human Homolog	SDC4[syndecan 4 (amphiglycan, ryudocan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAGAAGAAGG (12) 1.6 0.0016 P8 Cb GC CAGCCCTACC (2) 1.6 0.0016 Cb medulloblastoma AAGAAGAAGG (12) 2.3 0.0023 Cb medulloblastoma AAGCTTCCTC (5) 2.3 0.0023 Cb medulloblastoma AGAACTTGCT (2) 2.3 0.0023 Cb medulloblastoma CAGCCCTACC (2) 2.3 0.0023 Cb medulloblastoma GGAAGCCCAG (3) 2.3 0.0023 Cb medulloblastoma TTGGCTGGAT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture AAGAAGAAGA (9) 2.3 0.0023 P8 GC+1d culture AAGAAGAAGG (12) 2.3 0.0023 P8 GC+1d culture CAGCCCTACC (2) 2.3 0.0023 P8 GC+1d culture GGACCTGTAA (2) 1.1 0.0011 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GGACCTGTAA (2) 3.5 0.0035 P8 GC+SHH+1d culture CAGCCCTACC (2) 2.3 0.0023 P8 GC+SHH+1d culture AAGAAGAAGG (12) 1.2 0.0012 P8 GC+SHH+1d culture AAGCTTCCTC (5) 1.2 0.0012 P8 GC+SHH+1d culture AGAACTTGCT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGGCTGGAT (2) 1.2 0.0012 3T3 fibroblasts TTGGCTGGAT (2) 38.6 0.0386 3T3 fibroblasts CAGCCCTACC (2) 7 0.007 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus CAGCCCTACC (2) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GCGCCTGCCT (4) 1.8 0.0018 Hypothalamus TTGGCTGGAT (2) 1.8 0.0018 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CAGCCCTACC (2) 5.6 0.0056 E12.5 retina AAGAAGAAGA (9) 1.9 0.0019 E12.5 retina GGAAGCCCAG (3) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina AAGCTTTCTC (6) 1.8 0.0018 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina CACAAACCAC (3) 1.8 0.0018 E16.5 retina GCGCCTGCCT (4) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina CACAAACCAC (3) 1.8 0.0018 E18.5 retina CAGCCCTACC (2) 1.8 0.0018 E18.5 retina GCGCCTGCCT (4) 1.8 0.0018 E18.5 retina GGAAGCCCAG (3) 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P2.5 retina CAGCCCTACC (2) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina AAGAAGAAGG (12) 1.8 0.0018 P2.5 retina GGACCTGTAA (2) 1.8 0.0018 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CAGCCCTACC (2) 2 0.002 P4.5 retina GGACCTGTAA (2) 2 0.002 P4.5 retina TTGGCTGGAT (2) 2 0.002 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina AAGAAGAAGA (9) 1.7 0.0017 P6.5 retina AGAACTTGCT (2) 1.7 0.0017 P6.5 retina CAGCCCTACC (2) 1.7 0.0017 P6.5 retina GGAAGCCCAG (3) 1.7 0.0017 P10.5 crx- retina AAGCTTTCTC (6) 1.9 0.0019 P10.5 crx- retina TTGGCTGGAT (2) 1.9 0.0019 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AAGCTTTCTC (6) 1.9 0.0019 P10.5 crx+ retina AGAACTTGCT (2) 1.9 0.0019 P10.5 crx+ retina GGACCTGTAA (2) 1.9 0.0019 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CAGCCCTACC (2) 1.9 0.0019 Adult retinal TTGGCTGGAT (2) 1.9 0.0019 ONL AAGAAGAAGG (12) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AAGCTTCCTC (5) 1.9 0.0019 ONL CACAAACCAC (3) 1.9 0.0019 ONL GGACCTGTAA (2) 1.9 0.0019