Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3815	Sdc4	syndecan 4	2	2 94.0 cM	20971
Gene Ontology	cytoskeletal protein binding | extracellular space | integral to membrane | membrane
Human Homolog	SDC4[syndecan 4 (amphiglycan, ryudocan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 27 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  Cb medulloblastoma AAGCTTCCTC 2.3 0.0023 Cb medulloblastoma AGAACTTGCT 2.3 0.0023 Cb medulloblastoma GGAAGCCCAG 2.3 0.0023 Cb medulloblastoma TTGGCTGGAT 2.3 0.0023 P8 GC+1d culture GGACCTGTAA 1.1 0.0011 P8 GC+SHH+1d culture GGACCTGTAA 3.5 0.0035 P8 GC+SHH+1d culture AAGCTTCCTC 1.2 0.0012 P8 GC+SHH+1d culture AGAACTTGCT 1.2 0.0012 P8 GC+SHH+1d culture TTGGCTGGAT 1.2 0.0012 3T3 fibroblasts TTGGCTGGAT 38.6 0.0386 Hypothalamus GCGCCTGCCT 1.8 0.0018 Hypothalamus TTGGCTGGAT 1.8 0.0018 E12.5 retina GGAAGCCCAG 1.9 0.0019 E16.5 retina GCGCCTGCCT 1.8 0.0018 E18.5 retina GCGCCTGCCT 1.8 0.0018 E18.5 retina GGAAGCCCAG 1.8 0.0018 P2.5 retina GGACCTGTAA 1.8 0.0018 P4.5 retina GGACCTGTAA 2 0.002 P4.5 retina TTGGCTGGAT 2 0.002 P6.5 retina AGAACTTGCT 1.7 0.0017 P6.5 retina GGAAGCCCAG 1.7 0.0017 P10.5 crx- retina TTGGCTGGAT 1.9 0.0019 P10.5 crx+ retina AGAACTTGCT 1.9 0.0019 P10.5 crx+ retina GGACCTGTAA 1.9 0.0019 Adult retinal TTGGCTGGAT 1.9 0.0019 ONL AAGCTTCCTC 1.9 0.0019 ONL GGACCTGTAA 1.9 0.0019