Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40909	Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	18		20358
Gene Ontology	development | integral to membrane | membrane | neurogenesis | receptor activity
Human Homolog	SEMA6A[sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAATAT (6) AACAGCTCTG (2) TACATAATCC 21.2 0.0212 Cb medulloblastoma AAAAAAATAT (6) AGGCAGTGAG (2) TAAATTTGTG TACATAATCC 13.8 0.0138 P8 GC+1d culture AACAGCTCTG (2) AACCTGAGCG AGGCAGTGAG (2) ATAGAGTAAA GACCTCCAGT TAAATTTGTG TACATAATCC 54.7 0.0547 P8 GC+SHH+1d culture AACAGCTCTG (2) AACCTGAGCG AGGCAGTGAG (2) ATAGAGTAAA GACCTCCAGT TAAATTTGTG TACATAATCC 32.9 0.0329 3T3 fibroblasts TACATAATCC 3.5 0.0035 E15 cortex AACCTGAGCG TACATAATCC 24.7 0.0247 P1 cortex AACAGCTCTG (2) 4.5 0.0045 Hypothalamus TACATAATCC 1.8 0.0018 E12.5 retina AACAGCTCTG (2) ATAGAGTAAA TACATAATCC 20.7 0.0207 E14.5 retina AACAGCTCTG (2) TAAATTTGTG TACATAATCC 29.2 0.0292 E16.5 retina TACATAATCC 21.7 0.0217 E18.5 retina TACATAATCC 34.6 0.0346 P0.5 retina AACAGCTCTG (2) AACCTGAGCG TACATAATCC 23.5 0.0235 P2.5 retina AAAAAAATAT (6) AACAGCTCTG (2) GACCTCCAGT TAAATTTGTG TACATAATCC 26.6 0.0266 P4.5 retina TACATAATCC 23.8 0.0238 P6.5 retina AGGCAGTGAG (2) TACATAATCC 16.7 0.0167 P10.5 crx- retina AACCTGAGCG TACATAATCC 22.3 0.0223 P10.5 crx+ retina AACAGCTCTG (2) AGGCAGTGAG (2) TACATAATCC 17.3 0.0173 Adult retinal AACAGCTCTG (2) TAAATTTGTG TACATAATCC 13 0.013 ONL AAAAAAATAT (6) AACCTGAGCG TACATAATCC 9.5 0.0095