Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4141	Vldlr	very low density lipoprotein receptor	19	19 20.0 cM	22359
Gene Ontology	calcium ion binding | cholesterol metabolism | coated pit | endocytosis | extracellular space | integral to membrane | lipid transport | lipid transporter activity | membrane | receptor activity
Human Homolog	VLDLR[very low density lipoprotein receptor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAAAAAAA (36) 1.6 0.0016 P8 Cb GC TTGTGGTGAC (26) 1.6 0.0016 Cb medulloblastoma GGGAAAAAAA (36) 92.5 0.0925 Cb medulloblastoma TTGGAACACA (2) 11.6 0.0116 Cb medulloblastoma TTGTGGTGAC (26) 6.9 0.0069 P8 GC+1d culture TTGTGGTGAC (26) 9.1 0.0091 P8 GC+1d culture GATCCTGCAG (2) 1.1 0.0011 P8 GC+1d culture GGGAAAAAAA (36) 1.1 0.0011 P8 GC+SHH+1d culture TTGTGGTGAC (26) 5.9 0.0059 P8 GC+SHH+1d culture GGGAAAAAAA (36) 1.2 0.0012 3T3 fibroblasts AACTTTGACA (6) 3.5 0.0035 E15 cortex GATCCTGCAG (2) 4.9 0.0049 E15 cortex TTGTGGTGAC (26) 4.9 0.0049 P1 cortex GATCCTGCAG (2) 4.5 0.0045 P1 cortex GGGAAAAAAA (36) 4.5 0.0045 P1 cortex TTGTGGTGAC (26) 4.5 0.0045 Hypothalamus GGGAAAAAAA (36) 41.7 0.0417 Hypothalamus TTGTGGTGAC (26) 7.2 0.0072 Hypothalamus TTGGAACACA (2) 3.6 0.0036 E12.5 retina TTGTGGTGAC (26) 3.8 0.0038 E14.5 retina TTGTGGTGAC (26) 7.3 0.0073 E14.5 retina AACTTTGACA (6) 1.8 0.0018 E14.5 retina GGGAAAAAAA (36) 1.8 0.0018 E14.5 retina TTGGAACACA (2) 1.8 0.0018 E14.5 retina TTGGCCATCA (3) 1.8 0.0018 E16.5 retina TTGTGGTGAC (26) 14.5 0.0145 E16.5 retina TTGGAACACA (2) 5.4 0.0054 E16.5 retina GGGAAAAAAA (36) 3.6 0.0036 E16.5 retina AACTTTGACA (6) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GATCCTGCAG (2) 1.8 0.0018 E18.5 retina TTGTGGTGAC (26) 9.1 0.0091 E18.5 retina TAGGTACAGG 5.5 0.0055 E18.5 retina TTGGAACACA (2) 5.5 0.0055 E18.5 retina GGGAAAAAAA (36) 1.8 0.0018 P0.5 retina TTGTGGTGAC (26) 7.9 0.0079 P0.5 retina GGGAAAAAAA (36) 3.9 0.0039 P0.5 retina TTGGCCATCA (3) 3.9 0.0039 P0.5 retina AACTTTGACA (6) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P2.5 retina TTGTGGTGAC (26) 14.1 0.0141 P2.5 retina GGGAAAAAAA (36) 7 0.007 P2.5 retina GATCCTGCAG (2) 1.8 0.0018 P2.5 retina TTGGAACACA (2) 1.8 0.0018 P4.5 retina TTGTGGTGAC (26) 19.8 0.0198 P4.5 retina GGGAAAAAAA (36) 9.9 0.0099 P4.5 retina TTGGAACACA (2) 4 0.004 P4.5 retina TAGGTACAGG 2 0.002 P6.5 retina GGGAAAAAAA (36) 20 0.02 P6.5 retina TTGTGGTGAC (26) 11.7 0.0117 P6.5 retina TAGGTACAGG 1.7 0.0017 P6.5 retina TTGGAACACA (2) 1.7 0.0017 P10.5 crx- retina GGGAAAAAAA (36) 11.1 0.0111 P10.5 crx- retina TTGTGGTGAC (26) 9.3 0.0093 P10.5 crx- retina AACTTTGACA (6) 1.9 0.0019 P10.5 crx- retina TTGGAACACA (2) 1.9 0.0019 P10.5 crx- retina TTGGCCATCA (3) 1.9 0.0019 P10.5 crx+ retina GGGAAAAAAA (36) 23.1 0.0231 P10.5 crx+ retina TTGTGGTGAC (26) 23.1 0.0231 P10.5 crx+ retina TTGGAACACA (2) 9.6 0.0096 Adult retinal GGGAAAAAAA (36) 35.2 0.0352 Adult retinal TTGGAACACA (2) 9.3 0.0093 Adult retinal TTGTGGTGAC (26) 7.4 0.0074 Adult retinal AACTTTGACA (6) 3.7 0.0037 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal GATCCTGCAG (2) 1.9 0.0019 ONL GGGAAAAAAA (36) 30.6 0.0306 ONL TTGTGGTGAC (26) 5.7 0.0057 ONL TTGGAACACA (2) 3.8 0.0038 ONL AACTTTGACA (6) 1.9 0.0019 ONL GATCCTGCAG (2) 1.9 0.0019