Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.43005	Uba52	ubiquitin A-52 residue ribosomal protein fusion product 1	8	8 33.5 cM	22186
Gene Ontology	intracellular | nucleus | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	UBA52[ubiquitin A-52 residue ribosomal protein fusion product 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 134 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGACCCCGGG (5) 528.6 0.5286 P8 Cb GC ACGCCACAAT (2) 24.5 0.0245 P8 Cb GC CGACCCCGGG (2) 6.5 0.0065 P8 Cb GC TTGGCGTCTG 4.9 0.0049 P8 Cb GC CAGATCTTCG (9) 3.3 0.0033 P8 Cb GC GTCGGCCGCC (25) 3.3 0.0033 P8 Cb GC AGTGTGACGT (4) 1.6 0.0016 P8 Cb GC CCTTGAAAAT (6) 1.6 0.0016 P8 Cb GC TGAACCCCGG (2) 1.6 0.0016 P8 Cb GC TGACTCCGGG (3) 1.6 0.0016 Cb medulloblastoma TGACCCCGGG (5) 397.7 0.3977 Cb medulloblastoma ACGCCACAAT (2) 23.1 0.0231 Cb medulloblastoma AGTGTGACGT (4) 11.6 0.0116 Cb medulloblastoma GGACCCCGGG (5) 2.3 0.0023 Cb medulloblastoma TGACTCCGGG (3) 2.3 0.0023 P8 GC+1d culture TGACCCCGGG (5) 341.3 0.3413 P8 GC+1d culture CAGATCTTCG (9) 17.1 0.0171 P8 GC+1d culture ACGCCACAAT (2) 12.6 0.0126 P8 GC+1d culture CGACCCCGGG (2) 4.6 0.0046 P8 GC+1d culture AGTGTGACGT (4) 3.4 0.0034 P8 GC+1d culture CCTTGAAAAT (6) 2.3 0.0023 P8 GC+1d culture GGACCCCGGG (5) 1.1 0.0011 P8 GC+1d culture GTCGGCCGCC (25) 1.1 0.0011 P8 GC+SHH+1d culture TGACCCCGGG (5) 428.6 0.4286 P8 GC+SHH+1d culture ACGCCACAAT (2) 17.6 0.0176 P8 GC+SHH+1d culture CAGATCTTCG (9) 7 0.007 P8 GC+SHH+1d culture AGTGTGACGT (4) 4.7 0.0047 P8 GC+SHH+1d culture GTCGGCCGCC (25) 4.7 0.0047 P8 GC+SHH+1d culture CCTTGAAAAT (6) 2.3 0.0023 P8 GC+SHH+1d culture TTGGCGTCTG 2.3 0.0023 P8 GC+SHH+1d culture CGACCCCGGG (2) 1.2 0.0012 P8 GC+SHH+1d culture GGACCCCGGG (5) 1.2 0.0012 P8 GC+SHH+1d culture TAACCCCGGG 1.2 0.0012 P8 GC+SHH+1d culture TGACTCCGGG (3) 1.2 0.0012 3T3 fibroblasts TGACCCCGGG (5) 49.1 0.0491 3T3 fibroblasts TTGGCGTCTG 14 0.014 3T3 fibroblasts AGTGTGACGT (4) 7 0.007 3T3 fibroblasts ACGCCACAAT (2) 3.5 0.0035 3T3 fibroblasts GTCGGCCGCC (25) 3.5 0.0035 E15 cortex TGACCCCGGG (5) 326.6 0.3266 E15 cortex CAGATCTTCG (9) 19.8 0.0198 E15 cortex CGACCCCGGG (2) 14.8 0.0148 E15 cortex ACGCCACAAT (2) 9.9 0.0099 E15 cortex AGTGTGACGT (4) 4.9 0.0049 P1 cortex TGACCCCGGG (5) 27.3 0.0273 P1 cortex AGTGTGACGT (4) 4.5 0.0045 P1 cortex CAGATCTTCG (9) 4.5 0.0045 Hypothalamus TGACCCCGGG (5) 405.7 0.4057 Hypothalamus CAGATCTTCG (9) 25.4 0.0254 Hypothalamus ACGCCACAAT (2) 9.1 0.0091 Hypothalamus AGTGTGACGT (4) 1.8 0.0018 Hypothalamus GTCGGCCGCC (25) 1.8 0.0018 Hypothalamus TTGGCGTCTG 1.8 0.0018 E12.5 retina TGACCCCGGG (5) 604.5 0.6045 E12.5 retina ACGCCACAAT (2) 13.1 0.0131 E12.5 retina GGACCCCGGG (5) 3.8 0.0038 E12.5 retina TTGGCGTCTG 3.8 0.0038 E12.5 retina CAGATCTTCG (9) 1.9 0.0019 E12.5 retina GTCGGCCGCC (25) 1.9 0.0019 E14.5 retina TGACCCCGGG (5) 446.4 0.4464 E14.5 retina ACGCCACAAT (2) 47.4 0.0474 E14.5 retina AAGAAGTCAA (5) 3.6 0.0036 E14.5 retina CAGATCTTCG (9) 3.6 0.0036 E14.5 retina GTCGGCCGCC (25) 3.6 0.0036 E14.5 retina AGTGTGACGT (4) 1.8 0.0018 E14.5 retina CGACCCCGGG (2) 1.8 0.0018 E14.5 retina GGACCCCGGG (5) 1.8 0.0018 E14.5 retina TTGGCGTCTG 1.8 0.0018 E16.5 retina TGACCCCGGG (5) 610.4 0.6104 E16.5 retina ACGCCACAAT (2) 29 0.029 E16.5 retina CAGATCTTCG (9) 12.7 0.0127 E16.5 retina AAGAAGTCAA (5) 1.8 0.0018 E16.5 retina AGTGTGACGT (4) 1.8 0.0018 E16.5 retina TTGGCGTCTG 1.8 0.0018 E18.5 retina TGACCCCGGG (5) 885.8 0.8858 E18.5 retina ACGCCACAAT (2) 45.5 0.0455 E18.5 retina TTGGCGTCTG 5.5 0.0055 E18.5 retina AGTGTGACGT (4) 1.8 0.0018 E18.5 retina CAGATCTTCG (9) 1.8 0.0018 E18.5 retina GGACCCCGGG (5) 1.8 0.0018 E18.5 retina TGAACCCCGG (2) 1.8 0.0018 P0.5 retina TGACCCCGGG (5) 351.3 0.3513 P0.5 retina CAGATCTTCG (9) 19.6 0.0196 P0.5 retina AGTGTGACGT (4) 9.8 0.0098 P0.5 retina ACGCCACAAT (2) 7.9 0.0079 P0.5 retina GTCGGCCGCC (25) 5.9 0.0059 P0.5 retina CGACCCCGGG (2) 3.9 0.0039 P0.5 retina TGAACCCCGG (2) 2 0.002 P0.5 retina TTGGCGTCTG 2 0.002 P2.5 retina TGACCCCGGG (5) 468.1 0.4681 P2.5 retina ACGCCACAAT (2) 14.1 0.0141 P2.5 retina AGTGTGACGT (4) 8.8 0.0088 P2.5 retina CAGATCTTCG (9) 3.5 0.0035 P2.5 retina GTCGGCCGCC (25) 3.5 0.0035 P2.5 retina CGACCCCGGG (2) 1.8 0.0018 P2.5 retina GGACCCCGGG (5) 1.8 0.0018 P2.5 retina TTGGCGTCTG 1.8 0.0018 P4.5 retina TGACCCCGGG (5) 499.3 0.4993 P4.5 retina ACGCCACAAT (2) 27.7 0.0277 P4.5 retina CAGATCTTCG (9) 4 0.004 P4.5 retina AGTGTGACGT (4) 2 0.002 P4.5 retina CCTTGAAAAT (6) 2 0.002 P4.5 retina GTCGGCCGCC (25) 2 0.002 P4.5 retina TAACCCCGGG 2 0.002 P4.5 retina TTGGCGTCTG 2 0.002 P6.5 retina TGACCCCGGG (5) 456.8 0.4568 P6.5 retina ACGCCACAAT (2) 18.3 0.0183 P6.5 retina AGTGTGACGT (4) 8.3 0.0083 P6.5 retina CAGATCTTCG (9) 5 0.005 P6.5 retina CCTTGAAAAT (6) 1.7 0.0017 P6.5 retina CGACCCCGGG (2) 1.7 0.0017 P6.5 retina TTGGCGTCTG 1.7 0.0017 P10.5 crx- retina TGACCCCGGG (5) 245.2 0.2452 P10.5 crx- retina ACGCCACAAT (2) 27.9 0.0279 P10.5 crx- retina CAGATCTTCG (9) 20.4 0.0204 P10.5 crx- retina AGTGTGACGT (4) 14.9 0.0149 P10.5 crx- retina GTCGGCCGCC (25) 3.7 0.0037 P10.5 crx- retina CGACCCCGGG (2) 1.9 0.0019 P10.5 crx+ retina TGACCCCGGG (5) 461.4 0.4614 P10.5 crx+ retina ACGCCACAAT (2) 84.6 0.0846 P10.5 crx+ retina AGTGTGACGT (4) 9.6 0.0096 P10.5 crx+ retina TTGGCGTCTG 9.6 0.0096 P10.5 crx+ retina CAGATCTTCG (9) 3.8 0.0038 P10.5 crx+ retina GTCGGCCGCC (25) 3.8 0.0038 Adult retinal TGACCCCGGG (5) 150 0.15 Adult retinal ACGCCACAAT (2) 16.7 0.0167 Adult retinal CAGATCTTCG (9) 7.4 0.0074 Adult retinal AGTGTGACGT (4) 5.6 0.0056 Adult retinal CCTTGAAAAT (6) 1.9 0.0019 Adult retinal GTCGGCCGCC (25) 1.9 0.0019 Adult retinal TTGGCGTCTG 1.9 0.0019 ONL TGACCCCGGG (5) 124.5 0.1245 ONL ACGCCACAAT (2) 26.8 0.0268 ONL AGTGTGACGT (4) 1.9 0.0019