Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4438	Hmga1	high mobility group AT-hook 1	17	17 A3.3 (17 13.19 cM)	15361
Gene Ontology	chromatin | chromosome | chromosome organization and biogenesis (sensu Eukarya) | DNA binding | DNA packaging | nucleus | regulation of transcription, DNA-dependent | spermatogenesis
Human Homolog	HMGA1[high mobility group AT-hook 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 152 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCCCCACCC (8) 22.8 0.0228 P8 Cb GC TTCATTCTTA (2) 6.5 0.0065 P8 Cb GC CCCCTGGGGT (6) 3.3 0.0033 P8 Cb GC TCCCCCCCCC (8) 3.3 0.0033 P8 Cb GC CACTGGGTTG (3) 1.6 0.0016 P8 Cb GC GTTCTGGTTC 1.6 0.0016 P8 Cb GC TACACACACA (29) 1.6 0.0016 Cb medulloblastoma TTCCCCACCC (8) 9.2 0.0092 Cb medulloblastoma ACCTGCTGTG (5) 2.3 0.0023 Cb medulloblastoma CACTGGGTTT (3) 2.3 0.0023 Cb medulloblastoma GAAAAAAAAG (6) 2.3 0.0023 Cb medulloblastoma GTTCTGGTTC 2.3 0.0023 Cb medulloblastoma TACACACACA (29) 2.3 0.0023 P8 GC+1d culture TTCCCCACCC (8) 36.5 0.0365 P8 GC+1d culture TTCATTCTTA (2) 6.8 0.0068 P8 GC+1d culture GGGGGCGGGG (10) 3.4 0.0034 P8 GC+1d culture TCCCCCCCCC (8) 3.4 0.0034 P8 GC+1d culture CACTGGGTTG (3) 2.3 0.0023 P8 GC+1d culture CTGGGATCTA (6) 1.1 0.0011 P8 GC+1d culture GAAAAAAAAG (6) 1.1 0.0011 P8 GC+1d culture TCTCCATCAC (2) 1.1 0.0011 P8 GC+SHH+1d culture TTCCCCACCC (8) 32.8 0.0328 P8 GC+SHH+1d culture TTCATTCTTA (2) 7 0.007 P8 GC+SHH+1d culture CCCCTGGGGT (6) 2.3 0.0023 P8 GC+SHH+1d culture GAAAAAAAAG (6) 2.3 0.0023 P8 GC+SHH+1d culture GGGGGCAGGG (6) 2.3 0.0023 P8 GC+SHH+1d culture CACTGGGTTG (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGGGATCTA (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGGGCGGGG (10) 1.2 0.0012 P8 GC+SHH+1d culture TCTCCATCAC (2) 1.2 0.0012 3T3 fibroblasts CCCCTGGGGT (6) 14 0.014 3T3 fibroblasts CACTGGGTTG (3) 10.5 0.0105 3T3 fibroblasts TTCCCCACCC (8) 10.5 0.0105 3T3 fibroblasts ACCTGCTGTG (5) 3.5 0.0035 3T3 fibroblasts TTCATTCTTA (2) 3.5 0.0035 E15 cortex TTCCCCACCC (8) 39.6 0.0396 E15 cortex CACTGGGTTG (3) 4.9 0.0049 E15 cortex GGCACACCCT (4) 4.9 0.0049 E15 cortex GGGGGCGGGG (10) 4.9 0.0049 E15 cortex TTCATTCTTA (2) 4.9 0.0049 P1 cortex TTCCCCACCC (8) 22.7 0.0227 P1 cortex TTCATTCTTA (2) 13.6 0.0136 P1 cortex CCCCTGGGGT (6) 9.1 0.0091 P1 cortex GAAAAAAAAG (6) 4.5 0.0045 P1 cortex TCTCCATCAC (2) 4.5 0.0045 Hypothalamus TTCCCCACCC (8) 10.9 0.0109 Hypothalamus TACACACACA (29) 7.2 0.0072 Hypothalamus ACCTGCTGTG (5) 3.6 0.0036 Hypothalamus CACTGGGTTG (3) 3.6 0.0036 Hypothalamus CACTGGGTTT (3) 3.6 0.0036 Hypothalamus GAAAAAAAAG (6) 1.8 0.0018 Hypothalamus GTTCTGGTTC 1.8 0.0018 Hypothalamus TCTCCATCAC (2) 1.8 0.0018 Hypothalamus TTCATTCTTA (2) 1.8 0.0018 E12.5 retina TTCCCCACCC (8) 28.2 0.0282 E12.5 retina TTCATTCTTA (2) 15 0.015 E12.5 retina CACTGGGTTG (3) 5.6 0.0056 E12.5 retina GGGGGCAGGG (6) 3.8 0.0038 E12.5 retina GGGGGCGGGG (10) 3.8 0.0038 E12.5 retina AAACTGGAGA (5) 1.9 0.0019 E12.5 retina TACACACACA (29) 1.9 0.0019 E12.5 retina TCTCCATCAC (2) 1.9 0.0019 E14.5 retina TTCCCCACCC (8) 20 0.02 E14.5 retina CTGGGATCTA (6) 7.3 0.0073 E14.5 retina TACACACACA (29) 5.5 0.0055 E14.5 retina TCTCCATCAC (2) 3.6 0.0036 E14.5 retina TTCATTCTTA (2) 3.6 0.0036 E16.5 retina TTCCCCACCC (8) 29 0.029 E16.5 retina CTGGGATCTA (6) 5.4 0.0054 E16.5 retina TTCATTCTTA (2) 5.4 0.0054 E16.5 retina GGCACACCCT (4) 3.6 0.0036 E16.5 retina TACACACACA (29) 3.6 0.0036 E16.5 retina CACTGGGTTG (3) 1.8 0.0018 E16.5 retina GGGGGCAGGG (6) 1.8 0.0018 E16.5 retina GTTCTGGTTC 1.8 0.0018 E18.5 retina TTCCCCACCC (8) 61.8 0.0618 E18.5 retina GAAAAAAAAG (6) 3.6 0.0036 E18.5 retina GGGGGCAGGG (6) 3.6 0.0036 E18.5 retina CACTGGGTTT (3) 1.8 0.0018 E18.5 retina CTGGGATCTA (6) 1.8 0.0018 E18.5 retina GGCACACCCT (4) 1.8 0.0018 E18.5 retina GGGGGAAGGG (8) 1.8 0.0018 E18.5 retina TACACACACA (29) 1.8 0.0018 E18.5 retina TCCCCCCCCC (8) 1.8 0.0018 E18.5 retina TCTCCATCAC (2) 1.8 0.0018 E18.5 retina TTCATTCTTA (2) 1.8 0.0018 P0.5 retina TTCCCCACCC (8) 82.4 0.0824 P0.5 retina TTCATTCTTA (2) 31.4 0.0314 P0.5 retina CCCCTGGGGT (6) 9.8 0.0098 P0.5 retina CACTGGGTTG (3) 7.9 0.0079 P0.5 retina CTGGGATCTA (6) 5.9 0.0059 P0.5 retina TACACACACA (29) 5.9 0.0059 P0.5 retina GAAAAAAAAG (6) 2 0.002 P0.5 retina TCTCCATCAC (2) 2 0.002 P2.5 retina TTCCCCACCC (8) 70.4 0.0704 P2.5 retina TTCATTCTTA (2) 10.6 0.0106 P2.5 retina AAACTGGAGA (5) 3.5 0.0035 P2.5 retina CACTGGGTTG (3) 3.5 0.0035 P2.5 retina CCCCTGGGGT (6) 1.8 0.0018 P2.5 retina GAAAAAAAAG (6) 1.8 0.0018 P2.5 retina GGGGGCAGGG (6) 1.8 0.0018 P2.5 retina GGGGGCGGGG (10) 1.8 0.0018 P4.5 retina TTCCCCACCC (8) 61.4 0.0614 P4.5 retina CACTGGGTTG (3) 5.9 0.0059 P4.5 retina TACACACACA (29) 4 0.004 P4.5 retina AAACTGGAGA (5) 2 0.002 P4.5 retina CCCCTGGGGT (6) 2 0.002 P4.5 retina GAAAAAAAAG (6) 2 0.002 P4.5 retina GGGGGCAGGG (6) 2 0.002 P4.5 retina GTTCTGGTTC 2 0.002 P4.5 retina TCCCCCACAA 2 0.002 P6.5 retina TTCCCCACCC (8) 46.7 0.0467 P6.5 retina CACTGGGTTG (3) 5 0.005 P6.5 retina TACACACACA (29) 3.3 0.0033 P6.5 retina TCCCCCACAA 3.3 0.0033 P6.5 retina AAACTGGAGA (5) 1.7 0.0017 P6.5 retina ACCTGCTGTG (5) 1.7 0.0017 P6.5 retina CACTGGGTTT (3) 1.7 0.0017 P6.5 retina CCCCTGGGGT (6) 1.7 0.0017 P6.5 retina GAAAAAAAAG (6) 1.7 0.0017 P6.5 retina GGCACACCCT (4) 1.7 0.0017 P6.5 retina GGGGGCAGGG (6) 1.7 0.0017 P6.5 retina GTTCTGGTTC 1.7 0.0017 P10.5 crx- retina AAACTGGAGA (5) 7.4 0.0074 P10.5 crx- retina TTCCCCACCC (8) 7.4 0.0074 P10.5 crx- retina CACTGGGTTG (3) 5.6 0.0056 P10.5 crx- retina CACTGGGTTT (3) 3.7 0.0037 P10.5 crx- retina TACACACACA (29) 3.7 0.0037 P10.5 crx- retina TTCATTCTTA (2) 3.7 0.0037 P10.5 crx- retina GGGGGAAGGG (8) 1.9 0.0019 P10.5 crx- retina TCTCCATCAC (2) 1.9 0.0019 P10.5 crx+ retina TTCCCCACCC (8) 19.2 0.0192 P10.5 crx+ retina GGGGGAAGGG (8) 3.8 0.0038 P10.5 crx+ retina TTCATTCTTA (2) 3.8 0.0038 P10.5 crx+ retina ACCTGCTGTG (5) 1.9 0.0019 P10.5 crx+ retina CACTGGGTTG (3) 1.9 0.0019 P10.5 crx+ retina TACACACACA (29) 1.9 0.0019 Adult retinal TTCCCCACCC (8) 13 0.013 Adult retinal TTCATTCTTA (2) 9.3 0.0093 Adult retinal CACTGGGTTG (3) 5.6 0.0056 Adult retinal TACACACACA (29) 5.6 0.0056 Adult retinal AAACTGGAGA (5) 3.7 0.0037 Adult retinal CACTGGGTTT (3) 3.7 0.0037 Adult retinal CCCCTGGGGT (6) 3.7 0.0037 Adult retinal ACCTGCTGTG (5) 1.9 0.0019 Adult retinal GGGGGAAGGG (8) 1.9 0.0019 ONL TACACACACA (29) 13.4 0.0134 ONL TTCCCCACCC (8) 9.6 0.0096 ONL CACTGGGTTG (3) 5.7 0.0057 ONL AAACTGGAGA (5) 3.8 0.0038 ONL CACTGGGTTT (3) 1.9 0.0019 ONL TTCATTCTTA (2) 1.9 0.0019