Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4438	Hmga1	high mobility group AT-hook 1	17	17 A3.3 (17 13.19 cM)	15361
Gene Ontology	chromatin | chromosome | chromosome organization and biogenesis (sensu Eukarya) | DNA binding | DNA packaging | nucleus | regulation of transcription, DNA-dependent | spermatogenesis
Human Homolog	HMGA1[high mobility group AT-hook 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 152 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACTGGGTTG (2) CCCCTGGGGT GTTCTGGTTC TACACACACA (2) TCCCCCCCCC (2) TTCATTCTTA (2) TTCCCCACCC 40.7 0.0407 Cb medulloblastoma ACCTGCTGTG (2) CACTGGGTTT GAAAAAAAAG GTTCTGGTTC TACACACACA (2) TTCCCCACCC 20.7 0.0207 P8 GC+1d culture CACTGGGTTG (2) CTGGGATCTA (4) GAAAAAAAAG GGGGGCGGGG (2) TCCCCCCCCC (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 55.7 0.0557 P8 GC+SHH+1d culture CACTGGGTTG (2) CCCCTGGGGT CTGGGATCTA (4) GAAAAAAAAG GGGGGCAGGG GGGGGCGGGG (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 51.5 0.0515 3T3 fibroblasts ACCTGCTGTG (2) CACTGGGTTG (2) CCCCTGGGGT TTCATTCTTA (2) TTCCCCACCC 42 0.042 E15 cortex CACTGGGTTG (2) GGCACACCCT (2) GGGGGCGGGG (2) TTCATTCTTA (2) TTCCCCACCC 59.2 0.0592 P1 cortex CCCCTGGGGT GAAAAAAAAG TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 54.4 0.0544 Hypothalamus ACCTGCTGTG (2) CACTGGGTTG (2) CACTGGGTTT GAAAAAAAAG GTTCTGGTTC TACACACACA (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 36.1 0.0361 E12.5 retina AAACTGGAGA (3) CACTGGGTTG (2) GGGGGCAGGG GGGGGCGGGG (2) TACACACACA (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 62.1 0.0621 E14.5 retina CTGGGATCTA (4) TACACACACA (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 40 0.04 E16.5 retina CACTGGGTTG (2) CTGGGATCTA (4) GGCACACCCT (2) GGGGGCAGGG GTTCTGGTTC TACACACACA (2) TTCATTCTTA (2) TTCCCCACCC 52.4 0.0524 E18.5 retina CACTGGGTTT CTGGGATCTA (4) GAAAAAAAAG GGCACACCCT (2) GGGGGAAGGG GGGGGCAGGG TACACACACA (2) TCCCCCCCCC (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 83.4 0.0834 P0.5 retina CACTGGGTTG (2) CCCCTGGGGT CTGGGATCTA (4) GAAAAAAAAG TACACACACA (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 147.3 0.1473 P2.5 retina AAACTGGAGA (3) CACTGGGTTG (2) CCCCTGGGGT GAAAAAAAAG GGGGGCAGGG GGGGGCGGGG (2) TTCATTCTTA (2) TTCCCCACCC 95.2 0.0952 P4.5 retina AAACTGGAGA (3) CACTGGGTTG (2) CCCCTGGGGT GAAAAAAAAG GGGGGCAGGG GTTCTGGTTC TACACACACA (2) TCCCCCACAA TTCCCCACCC 83.3 0.0833 P6.5 retina AAACTGGAGA (3) ACCTGCTGTG (2) CACTGGGTTG (2) CACTGGGTTT CCCCTGGGGT GAAAAAAAAG GGCACACCCT (2) GGGGGCAGGG GTTCTGGTTC TACACACACA (2) TCCCCCACAA TTCCCCACCC 71.9 0.0719 P10.5 crx- retina AAACTGGAGA (3) CACTGGGTTG (2) CACTGGGTTT GGGGGAAGGG TACACACACA (2) TCTCCATCAC TTCATTCTTA (2) TTCCCCACCC 35.3 0.0353 P10.5 crx+ retina ACCTGCTGTG (2) CACTGGGTTG (2) GGGGGAAGGG TACACACACA (2) TTCATTCTTA (2) TTCCCCACCC 32.5 0.0325 Adult retinal AAACTGGAGA (3) ACCTGCTGTG (2) CACTGGGTTG (2) CACTGGGTTT CCCCTGGGGT GGGGGAAGGG TACACACACA (2) TTCATTCTTA (2) TTCCCCACCC 48.4 0.0484 ONL AAACTGGAGA (3) CACTGGGTTG (2) CACTGGGTTT TACACACACA (2) TTCATTCTTA (2) TTCCCCACCC 36.3 0.0363