Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.45028
C230060L03Rik
RIKEN cDNA C230060L03 gene
11
328012
Mm.45028
2610002J23Rik
RIKEN cDNA 2610002J23 gene
11
69886
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 138 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TTCAAAAAAA (
25
)
13.1
0.0131
P8 Cb GC
TGTGCAGATG (
6
)
8.2
0.0082
P8 Cb GC
TCTCAAAAAA (
22
)
4.9
0.0049
P8 Cb GC
TTTAAGATAC
(
3
)
4.9
0.0049
P8 Cb GC
CTGGGCTTGA (
4
)
3.3
0.0033
P8 Cb GC
CTAGGGAAAA
(
2
)
1.6
0.0016
P8 Cb GC
TGTGTGTATA (
4
)
1.6
0.0016
P8 Cb GC
TTTCAAAAAA (
21
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TTCAAAAAAA (
25
)
37
0.037
Cb medulloblastoma
TCTCAAAAAA (
22
)
9.2
0.0092
Cb medulloblastoma
TTTAAGATAC
(
3
)
6.9
0.0069
Cb medulloblastoma
AGCAGAGAGC (
8
)
2.3
0.0023
Cb medulloblastoma
CTGGGCTTGA (
4
)
2.3
0.0023
Cb medulloblastoma
TGTGCAGATG (
6
)
2.3
0.0023
Cb medulloblastoma
TTTCAAAAAA (
21
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTCAAAAAAA (
25
)
12.6
0.0126
P8 GC+1d culture
TGTGCAGATG (
6
)
10.3
0.0103
P8 GC+1d culture
CTGGGCTTGA (
4
)
4.6
0.0046
P8 GC+1d culture
TCTCAAAAAA (
22
)
3.4
0.0034
P8 GC+1d culture
TTTCAAAAAA (
21
)
2.3
0.0023
P8 GC+1d culture
AGCAAGATAG
(
2
)
1.1
0.0011
P8 GC+1d culture
CTAGGGAAAA
(
2
)
1.1
0.0011
P8 GC+1d culture
TGTGTGTATA (
4
)
1.1
0.0011
P8 GC+1d culture
TTTAAGATAC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TTCAAAAAAA (
25
)
29.3
0.0293
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TTTAAGATAC
(
3
)
7
0.007
P8 GC+SHH+1d culture
CTGGGCTTGA (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
TGTGCAGATG (
6
)
4.7
0.0047
P8 GC+SHH+1d culture
TCTCAAAAAA (
22
)
3.5
0.0035
P8 GC+SHH+1d culture
AGCAGAGAGC (
8
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGTGCAGATG (
6
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
TTCAAAAAAA (
25
)
29.7
0.0297
E15 cortex
CTGGGCTTGA (
4
)
9.9
0.0099
E15 cortex
TTTAAGATAC
(
3
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
CTGGGCTTGA (
4
)
9.1
0.0091
P1 cortex
TGTGCAGATG (
6
)
9.1
0.0091
P1 cortex
TTCAAAAAAA (
25
)
4.5
0.0045
P1 cortex
TTTCAAAAAA (
21
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TGTGCAGATG (
6
)
7.2
0.0072
Hypothalamus
TTCAAAAAAA (
25
)
7.2
0.0072
Hypothalamus
TCTCAAAAAA (
22
)
5.4
0.0054
Hypothalamus
AGCAAGATAG
(
2
)
1.8
0.0018
Hypothalamus
TTTAAGATAC
(
3
)
1.8
0.0018
Hypothalamus
TTTCAAAAAA (
21
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TGTGCAGATG (
6
)
11.3
0.0113
E12.5 retina
TTCAAAAAAA (
25
)
9.4
0.0094
E12.5 retina
CTGGGCTTGA (
4
)
5.6
0.0056
E12.5 retina
TCAACAACAA (
5
)
1.9
0.0019
E12.5 retina
TGTGTGTTTG (
6
)
1.9
0.0019
E12.5 retina
TTTAAGATAC
(
3
)
1.9
0.0019
E12.5 retina
TTTCAAAAAA (
21
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TTCAAAAAAA (
25
)
20
0.02
E14.5 retina
TGTGCAGATG (
6
)
18.2
0.0182
E14.5 retina
CTGGGCTTGA (
4
)
5.5
0.0055
E14.5 retina
TCTCAAAAAA (
22
)
3.6
0.0036
E14.5 retina
TTTAAGATAC
(
3
)
3.6
0.0036
E14.5 retina
AGCAGAGAGC (
8
)
1.8
0.0018
E14.5 retina
TCAACAACAA (
5
)
1.8
0.0018
E14.5 retina
TGTGTGTTTG (
6
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TGTGCAGATG (
6
)
27.2
0.0272
E16.5 retina
TTCAAAAAAA (
25
)
9.1
0.0091
E16.5 retina
TCTCAAAAAA (
22
)
3.6
0.0036
E16.5 retina
TTTCAAAAAA (
21
)
3.6
0.0036
E18.5 retina
TTCAAAAAAA (
25
)
36.4
0.0364
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TGTGCAGATG (
6
)
16.4
0.0164
E18.5 retina
TCTCAAAAAA (
22
)
5.5
0.0055
E18.5 retina
TGTGTGTATA (
4
)
3.6
0.0036
E18.5 retina
TGTGTGTTTG (
6
)
1.8
0.0018
E18.5 retina
TTTAAGATAC
(
3
)
1.8
0.0018
E18.5 retina
TTTCAAAAAA (
21
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
CTGGGCTTGA (
4
)
13.7
0.0137
P0.5 retina
TTCAAAAAAA (
25
)
9.8
0.0098
P0.5 retina
TGTGCAGATG (
6
)
3.9
0.0039
P0.5 retina
TTTAAGATAC
(
3
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TTCAAAAAAA (
25
)
7
0.007
P2.5 retina
CTGGGCTTGA (
4
)
5.3
0.0053
P2.5 retina
TGTGCAGATG (
6
)
5.3
0.0053
P2.5 retina
TCTCAAAAAA (
22
)
1.8
0.0018
P2.5 retina
TTTAAGATAC
(
3
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TTCAAAAAAA (
25
)
31.7
0.0317
P4.5 retina
TGTGCAGATG (
6
)
11.9
0.0119
P4.5 retina
TTTAAGATAC
(
3
)
4
0.004
P4.5 retina
AGCAAGATAG
(
2
)
2
0.002
P4.5 retina
AGCAGAGAGC (
8
)
2
0.002
P4.5 retina
CTGGGCTTGA (
4
)
2
0.002
P4.5 retina
TCTCAAAAAA (
22
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TTCAAAAAAA (
25
)
8.3
0.0083
P6.5 retina
TTTAAGATAC
(
3
)
5
0.005
P6.5 retina
CTGGGCTTGA (
4
)
3.3
0.0033
P6.5 retina
TCTCAAAAAA (
22
)
3.3
0.0033
P6.5 retina
TGTGCAGATG (
6
)
3.3
0.0033
P6.5 retina
CTAGGGAAAA
(
2
)
1.7
0.0017
P6.5 retina
TCAACAACAA (
5
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
CTGGGCTTGA (
4
)
5.6
0.0056
P10.5 crx- retina
TTCAAAAAAA (
25
)
5.6
0.0056
P10.5 crx- retina
TTTAAGATAC
(
3
)
5.6
0.0056
P10.5 crx- retina
TGTGTGTATA (
4
)
3.7
0.0037
P10.5 crx- retina
TGTGCAGATG (
6
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TGTGCAGATG (
6
)
13.5
0.0135
P10.5 crx+ retina
TTCAAAAAAA (
25
)
9.6
0.0096
P10.5 crx+ retina
TCTCAAAAAA (
22
)
3.8
0.0038
P10.5 crx+ retina
CTAGGGAAAA
(
2
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTTTG (
6
)
1.9
0.0019
P10.5 crx+ retina
TTTAAGATAC
(
3
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CTGGGCTTGA (
4
)
9.3
0.0093
Adult retinal
TGTGCAGATG (
6
)
9.3
0.0093
Adult retinal
TCTCAAAAAA (
22
)
7.4
0.0074
Adult retinal
TTCAAAAAAA (
25
)
5.6
0.0056
Adult retinal
AGCAGAGAGC (
8
)
1.9
0.0019
Adult retinal
TCAACAACAA (
5
)
1.9
0.0019
Adult retinal
TGTGTGTTTG (
6
)
1.9
0.0019
Adult retinal
TTTAAGATAC
(
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TCTCAAAAAA (
22
)
7.7
0.0077
ONL
TGTGCAGATG (
6
)
5.7
0.0057
ONL
TTCAAAAAAA (
25
)
3.8
0.0038
ONL
TGTGTGTATA (
4
)
1.9
0.0019
ONL
TTTAAGATAC
(
3
)
1.9
0.0019
ONL
TTTCAAAAAA (
21
)
1.9
0.0019
