Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.45124	Kitl	kit ligand	10	10 D1 (10 57.0 cM)	17311
Gene Ontology	cell adhesion | extracellular space | germ-cell development | growth factor activity | integral to membrane | integral to membrane | membrane | plasma membrane | protein binding | stem cell factor receptor binding
Human Homolog	KITLG[KIT ligand]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTTAATGAA (2) 27.7 0.0277 P8 Cb GC TGTTCAGTCC (2) 4.9 0.0049 P8 Cb GC TGCTTTGAAA (5) 1.6 0.0016 Cb medulloblastoma TCTTAATGAA (2) 46.2 0.0462 Cb medulloblastoma CCTGCAACCA (4) 11.6 0.0116 Cb medulloblastoma TGCTTTGAAA (5) 6.9 0.0069 Cb medulloblastoma AGATGGCTTT (2) 4.6 0.0046 Cb medulloblastoma TGTTCAGTCC (2) 4.6 0.0046 P8 GC+1d culture TCTTAATGAA (2) 21.7 0.0217 P8 GC+1d culture TGCTTTGAAA (5) 6.8 0.0068 P8 GC+1d culture CCTGCAACCA (4) 4.6 0.0046 P8 GC+1d culture TAATTTCAAA (2) 1.1 0.0011 P8 GC+1d culture TGTTCAGTCC (2) 1.1 0.0011 P8 GC+SHH+1d culture TCTTAATGAA (2) 21.1 0.0211 P8 GC+SHH+1d culture TGCTTTGAAA (5) 7 0.007 P8 GC+SHH+1d culture TGTTCAGTCC (2) 4.7 0.0047 P8 GC+SHH+1d culture CCTGCAACCA (4) 3.5 0.0035 P8 GC+SHH+1d culture AGATGGCTTT (2) 1.2 0.0012 3T3 fibroblasts CCTGCAACCA (4) 10.5 0.0105 3T3 fibroblasts AGATGGCTTT (2) 7 0.007 3T3 fibroblasts TGCTTTGAAA (5) 3.5 0.0035 E15 cortex CCTGCAACCA (4) 4.9 0.0049 E15 cortex TCTTAATGAA (2) 4.9 0.0049 E15 cortex TGCTTTGAAA (5) 4.9 0.0049 P1 cortex TCTTAATGAA (2) 18.2 0.0182 P1 cortex CCTGCAACCA (4) 9.1 0.0091 P1 cortex TGCTTTGAAA (5) 9.1 0.0091 P1 cortex TGTTCAGTCC (2) 4.5 0.0045 Hypothalamus TCTTAATGAA (2) 99.6 0.0996 Hypothalamus TGTTCAGTCC (2) 5.4 0.0054 Hypothalamus AGATGGCTTT (2) 1.8 0.0018 Hypothalamus CCTGCAACCA (4) 1.8 0.0018 Hypothalamus GTAGTGTATG (2) 1.8 0.0018 Hypothalamus TGCTTTGAAA (5) 1.8 0.0018 E12.5 retina TCTTAATGAA (2) 50.7 0.0507 E12.5 retina CCTGCAACCA (4) 3.8 0.0038 E12.5 retina TATGTTTTGA (3) 1.9 0.0019 E12.5 retina TGTTCAGTCC (2) 1.9 0.0019 E14.5 retina TCTTAATGAA (2) 20 0.02 E14.5 retina TGTTCAGTCC (2) 9.1 0.0091 E14.5 retina CCTGCAACCA (4) 1.8 0.0018 E14.5 retina TGCTTTGAAA (5) 1.8 0.0018 E16.5 retina TCTTAATGAA (2) 21.7 0.0217 E16.5 retina TGTTCAGTCC (2) 12.7 0.0127 E16.5 retina TGCTTTGAAA (5) 3.6 0.0036 E16.5 retina TATGTTTTGA (3) 1.8 0.0018 E18.5 retina TCTTAATGAA (2) 38.2 0.0382 E18.5 retina TGTTCAGTCC (2) 7.3 0.0073 E18.5 retina TGCTTTGAAA (5) 3.6 0.0036 P0.5 retina TCTTAATGAA (2) 29.4 0.0294 P0.5 retina CCTGCAACCA (4) 11.8 0.0118 P0.5 retina AGATGGCTTT (2) 2 0.002 P2.5 retina TCTTAATGAA (2) 35.2 0.0352 P2.5 retina TGCTTTGAAA (5) 10.6 0.0106 P2.5 retina CCTGCAACCA (4) 1.8 0.0018 P2.5 retina GTAGTGTATG (2) 1.8 0.0018 P4.5 retina TCTTAATGAA (2) 33.7 0.0337 P4.5 retina TGTTCAGTCC (2) 7.9 0.0079 P4.5 retina TGCTTTGAAA (5) 5.9 0.0059 P4.5 retina CCTGCAACCA (4) 4 0.004 P6.5 retina TCTTAATGAA (2) 41.7 0.0417 P6.5 retina CCTGCAACCA (4) 3.3 0.0033 P6.5 retina TAATTTCAAA (2) 3.3 0.0033 P6.5 retina TGTTCAGTCC (2) 3.3 0.0033 P6.5 retina TATGTTTTGA (3) 1.7 0.0017 P6.5 retina TGCTTTGAAA (5) 1.7 0.0017 P10.5 crx- retina TCTTAATGAA (2) 31.6 0.0316 P10.5 crx- retina TGTTCAGTCC (2) 5.6 0.0056 P10.5 crx- retina CCTGCAACCA (4) 3.7 0.0037 P10.5 crx- retina GTAGTGTATG (2) 1.9 0.0019 P10.5 crx- retina TGCTTTGAAA (5) 1.9 0.0019 P10.5 crx+ retina TCTTAATGAA (2) 28.8 0.0288 P10.5 crx+ retina TGCTTTGAAA (5) 9.6 0.0096 P10.5 crx+ retina TGTTCAGTCC (2) 9.6 0.0096 P10.5 crx+ retina CCTGCAACCA (4) 5.8 0.0058 Adult retinal TCTTAATGAA (2) 16.7 0.0167 Adult retinal CCTGCAACCA (4) 9.3 0.0093 ONL TCTTAATGAA (2) 32.6 0.0326