Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.45953	C81302	expressed sequence C81302	2		97011
Mm.45953	Snap25	synaptosomal-associated protein 25	2	2 F3 (2 78.2 cM)	20614
Gene Ontology	neurotransmitter secretion | neurotransmitter secretion | neurotransmitter uptake | plasma membrane | SNARE binding | synaptic transmission | synaptic vesicle docking | synaptosome
Human Homolog	SNAP25[synaptosomal-associated protein, 25kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GGAGAAGGCT (5) 11.4 0.0114 P8 Cb GC TATATTAAAT (5) 4.9 0.0049 P8 Cb GC AGGAACCAAA (3) 1.6 0.0016 P8 Cb GC CTGCAGCTGG (7) 1.6 0.0016 P8 Cb GC TGTTTTTTGT (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TATATTAAAT (5) 90.2 0.0902 Cb medulloblastoma AGGAACCAAA (3) 46.2 0.0462 Cb medulloblastoma TGTTTTTGTT (5) 6.9 0.0069 Cb medulloblastoma TGTTTTTTGT (6) 6.9 0.0069 Cb medulloblastoma CTCAGTATTG (5) 4.6 0.0046 Cb medulloblastoma CTGCAGCTGG (7) 4.6 0.0046 Cb medulloblastoma GGAGAAGGCT (5) 4.6 0.0046 Cb medulloblastoma TATATTAAAA (7) 4.6 0.0046 Cb medulloblastoma AAAGAAGCAG (6) 2.3 0.0023 Cb medulloblastoma GGGAAGAAAA (13) 2.3 0.0023 Cb medulloblastoma TGTGTGATTT (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TATATTAAAT (5) 21.7 0.0217 P8 GC+1d culture AGGAACCAAA (3) 6.8 0.0068 P8 GC+1d culture CTGTAATGAT (2) 3.4 0.0034 P8 GC+1d culture GGAGAAGGCT (5) 3.4 0.0034 P8 GC+1d culture GCTGGCAGCT (8) 2.3 0.0023 P8 GC+1d culture TGTTTTTGTT (5) 2.3 0.0023 P8 GC+1d culture TGTTTTTTGT (6) 2.3 0.0023 P8 GC+1d culture CTCAGTATTG (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TATATTAAAT (5) 11.7 0.0117 P8 GC+SHH+1d culture AGGAACCAAA (3) 7 0.007 P8 GC+SHH+1d culture GGAGAAGGCT (5) 5.9 0.0059 P8 GC+SHH+1d culture TGTTTTTTGT (6) 5.9 0.0059 P8 GC+SHH+1d culture CTGTAATGAT (2) 3.5 0.0035 P8 GC+SHH+1d culture TGTTTTTGTT (5) 3.5 0.0035 P8 GC+SHH+1d culture GCTGGCAGCT (8) 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GCTGGCAGCT (8) 14 0.014 3T3 fibroblasts AAAGAAGCAG (6) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGAGAAGGCT (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TATATTAAAT (5) 18.2 0.0182 P1 cortex AAAATAATTT (7) 4.5 0.0045 P1 cortex AAAGAAGCAA (6) 4.5 0.0045 P1 cortex AGAACCTGGC (6) 4.5 0.0045 P1 cortex CTGTAATGAT (2) 4.5 0.0045 P1 cortex GCTGGCAGCT (8) 4.5 0.0045 P1 cortex TGTTTTTGTT (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TATATTAAAT (5) 110.5 0.1105 Hypothalamus AGGAACCAAA (3) 19.9 0.0199 Hypothalamus TGTTTTTTGT (6) 12.7 0.0127 Hypothalamus CTGTAATGAT (2) 9.1 0.0091 Hypothalamus TATATTAAAA (7) 9.1 0.0091 Hypothalamus TGTTTTTGTT (5) 9.1 0.0091 Hypothalamus CTCAGTATTG (5) 5.4 0.0054 Hypothalamus AAAATAATTT (7) 3.6 0.0036 Hypothalamus GGAGAAGGCT (5) 1.8 0.0018 Hypothalamus GGGAAGAAAA (13) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TATATTAAAT (5) 5.6 0.0056 E12.5 retina TGTTTTTGTT (5) 3.8 0.0038 E12.5 retina AAAGAAGCAG (6) 1.9 0.0019 E12.5 retina GGAGAAAGGT (4) 1.9 0.0019 E12.5 retina GGAGAAGGCT (5) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TATATTAAAT (5) 12.8 0.0128 E14.5 retina TGTTTTTGTT (5) 5.5 0.0055 E14.5 retina TGTTTTTTGT (6) 3.6 0.0036 E14.5 retina AAAATAATTT (7) 1.8 0.0018 E14.5 retina AAAGAAGCAA (6) 1.8 0.0018 E14.5 retina CTGTAATGAT (2) 1.8 0.0018 E14.5 retina GGAGAAGGCT (5) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TATATTAAAT (5) 10.9 0.0109 E16.5 retina GGAGAAGGCT (5) 1.8 0.0018 E16.5 retina TGTGTGATTT (2) 1.8 0.0018 E16.5 retina TGTTTTTTGT (6) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TATATTAAAT (5) 18.2 0.0182 E18.5 retina GGAGAAGGCT (5) 10.9 0.0109 E18.5 retina TGTTTTTGTT (5) 7.3 0.0073 E18.5 retina CTGTAATGAT (2) 3.6 0.0036 E18.5 retina TATATTAAAA (7) 3.6 0.0036 E18.5 retina AAAATAATTT (7) 1.8 0.0018 E18.5 retina GCTGGCAGCT (8) 1.8 0.0018 E18.5 retina TGTGTGATTT (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGGAACCAAA (3) 2 0.002 P0.5 retina CTGCAGCTGG (7) 2 0.002 P0.5 retina CTGTAATGAT (2) 2 0.002 P0.5 retina GGAGAAGGCT (5) 2 0.002 P0.5 retina TATATTAAAT (5) 2 0.002 P0.5 retina TGTTTTTTGT (6) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TATATTAAAT (5) 31.7 0.0317 P2.5 retina AGGAACCAAA (3) 8.8 0.0088 P2.5 retina CTGTAATGAT (2) 5.3 0.0053 P2.5 retina TGTTTTTTGT (6) 5.3 0.0053 P2.5 retina GGAGAAGGCT (5) 3.5 0.0035 P2.5 retina AAAGAAGCAG (6) 1.8 0.0018 P2.5 retina TGTTTTTGTT (5) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TATATTAAAT (5) 17.8 0.0178 P4.5 retina TGTTTTTGTT (5) 13.9 0.0139 P4.5 retina AGGAACCAAA (3) 7.9 0.0079 P4.5 retina CTGTAATGAT (2) 4 0.004 P4.5 retina GGAGAAGGCT (5) 4 0.004 P4.5 retina TGTTTTTTGT (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TATATTAAAT (5) 51.7 0.0517 P6.5 retina AGGAACCAAA (3) 18.3 0.0183 P6.5 retina GGAGAAGGCT (5) 6.7 0.0067 P6.5 retina GAATTTACCT (2) 3.3 0.0033 P6.5 retina CTCAGTATTG (5) 1.7 0.0017 P6.5 retina CTGTAATGAT (2) 1.7 0.0017 P6.5 retina TATATTAAAA (7) 1.7 0.0017 P6.5 retina TGTGTGATTT (2) 1.7 0.0017 P6.5 retina TGTTTTTTGT (6) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TATATTAAAT (5) 35.3 0.0353 P10.5 crx- retina AGGAACCAAA (3) 5.6 0.0056 P10.5 crx- retina TGTTTTTTGT (6) 3.7 0.0037 P10.5 crx- retina AAAATAATTT (7) 1.9 0.0019 P10.5 crx- retina AAAGAAGCAG (6) 1.9 0.0019 P10.5 crx- retina CTGCAGCTGG (7) 1.9 0.0019 P10.5 crx- retina CTGTAATGAT (2) 1.9 0.0019 P10.5 crx- retina GGAGAAAGGT (4) 1.9 0.0019 P10.5 crx- retina GGAGAAGGCT (5) 1.9 0.0019 P10.5 crx- retina TGTTTTTGTT (5) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TATATTAAAT (5) 21.1 0.0211 P10.5 crx+ retina AGGAACCAAA (3) 7.7 0.0077 P10.5 crx+ retina TGTTTTTGTT (5) 5.8 0.0058 P10.5 crx+ retina GGAGAAGGCT (5) 3.8 0.0038 P10.5 crx+ retina AAAGAAGCAA (6) 1.9 0.0019 P10.5 crx+ retina CTGCAGCTGG (7) 1.9 0.0019 P10.5 crx+ retina GAATTTACCT (2) 1.9 0.0019 P10.5 crx+ retina TGTTTTTTGT (6) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal AGGAACCAAA (3) 27.8 0.0278 Adult retinal TATATTAAAT (5) 18.5 0.0185 Adult retinal CTGCAGCTGG (7) 3.7 0.0037 Adult retinal CTGTAATGAT (2) 3.7 0.0037 Adult retinal GGAGAAAGGT (4) 3.7 0.0037 Adult retinal AGAACCTGGC (6) 1.9 0.0019 Adult retinal GCTGGCAGCT (8) 1.9 0.0019 Adult retinal TATATTAAAA (7) 1.9 0.0019 Adult retinal TGTGTGATTT (2) 1.9 0.0019 Adult retinal TGTTTTTGTT (5) 1.9 0.0019 Adult retinal TGTTTTTTGT (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGGAACCAAA (3) 19.2 0.0192 ONL TATATTAAAT (5) 17.2 0.0172 ONL GCTGGCAGCT (8) 7.7 0.0077 ONL AAAGAAGCAA (6) 1.9 0.0019 ONL CTGTAATGAT (2) 1.9 0.0019 ONL GGAGAAGGCT (5) 1.9 0.0019 ONL TGTTTTTGTT (5) 1.9 0.0019 ONL TGTTTTTTGT (6) 1.9 0.0019