Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4691	Nid1	nidogen 1	13	13 7.0 cM	18073
Gene Ontology	basement membrane | basement membrane | basement membrane | calcium ion binding | cell adhesion | cell-matrix adhesion | extracellular matrix | extracellular space | membrane | protein binding
Human Homolog	NID[nidogen (enactin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 37 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAATTGTT (2) 13.1 0.0131 P8 Cb GC ACAAAAAAAA (31) 6.5 0.0065 Cb medulloblastoma ACAAAAAAAA (31) 34.7 0.0347 Cb medulloblastoma GTAAATTGTT (2) 2.3 0.0023 P8 GC+1d culture GTAAATTGTT (2) 6.8 0.0068 P8 GC+1d culture ACAAAAAAAA (31) 5.7 0.0057 P8 GC+1d culture GATGGCACCA (4) 1.1 0.0011 P8 GC+SHH+1d culture ACAAAAAAAA (31) 14.1 0.0141 3T3 fibroblasts CCTGCAACCC (4) 42.1 0.0421 E15 cortex ACAAAAAAAA (31) 4.9 0.0049 E15 cortex CCTGCAACCC (4) 4.9 0.0049 E15 cortex GATGGCACCA (4) 4.9 0.0049 P1 cortex AAGAAGACAG (11) 4.5 0.0045 P1 cortex ACAAAAAAAA (31) 4.5 0.0045 Hypothalamus ACAAAAAAAA (31) 10.9 0.0109 Hypothalamus AAGAAGACAG (11) 1.8 0.0018 Hypothalamus GATGGCACCA (4) 1.8 0.0018 Hypothalamus GTAAATTGTT (2) 1.8 0.0018 E12.5 retina GTAAATTGTT (2) 3.8 0.0038 E12.5 retina ACAAAAAAAA (31) 1.9 0.0019 E14.5 retina ACAAAAAAAA (31) 5.5 0.0055 E14.5 retina CCTGCAACCC (4) 1.8 0.0018 E16.5 retina AAGAAGACAG (11) 3.6 0.0036 E16.5 retina GTAAATTGTT (2) 3.6 0.0036 E16.5 retina ACAAAAAAAA (31) 1.8 0.0018 E18.5 retina ACAAAAAAAA (31) 14.6 0.0146 E18.5 retina GTAAATTGTT (2) 3.6 0.0036 P0.5 retina ACAAAAAAAA (31) 5.9 0.0059 P2.5 retina ACAAAAAAAA (31) 5.3 0.0053 P4.5 retina ACAAAAAAAA (31) 5.9 0.0059 P4.5 retina GTAAATTGTT (2) 4 0.004 P6.5 retina ACAAAAAAAA (31) 1.7 0.0017 P10.5 crx- retina GTAAATTGTT (2) 3.7 0.0037 P10.5 crx- retina ACAAAAAAAA (31) 1.9 0.0019 P10.5 crx+ retina ACAAAAAAAA (31) 11.5 0.0115 P10.5 crx+ retina GTAAATTGTT (2) 5.8 0.0058 ONL ACAAAAAAAA (31) 5.7 0.0057