Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.48795	1700094C10Rik	RIKEN cDNA 1700094C10 gene	5		74299
Mm.48795	1190009E20Rik	RIKEN cDNA 1190009E20 gene	5		68902
Mm.48795	1700112M01Rik	RIKEN cDNA 1700112M01 gene	5		71184
Mm.48795	Usp46	ubiquitin specific protease 46	5		69727
Gene Ontology	cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP46[ubiquitin specific protease 46]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTGCCTCCT (5) GGCCAGAGAC (4) TCAACAACAG (5) TTGCAGCAAA 9.8 0.0098 Cb medulloblastoma CATTCCTTTG GATGGTGAAC (5) GGCCAGAGAC (4) TTGCAGCAAA 39.2 0.0392 P8 GC+1d culture CCTGCCTCCT (5) GGACAGCTCC (3) GGCCAGAGAC (4) TTGCAGCAAA 14.8 0.0148 P8 GC+SHH+1d culture AATATTAAAA (5) CATTCCTTTG GGACAGCTCC (3) GGCCAGAGAC (4) TTGCAGCAAA 12.9 0.0129 3T3 fibroblasts GATGGTGAAC (5) 3.5 0.0035 E15 cortex CTACTGTAAC (4) 4.9 0.0049 P1 cortex CTACTGTAAC (4) TTGCAGCAAA 13.6 0.0136 Hypothalamus CATTCCTTTG GGCCAGAGAC (4) TTGCAGCAAA 10.8 0.0108 E12.5 retina GATGGTGAAC (5) GGCCAGAGAC (4) TTGCAGCAAA 13.2 0.0132 E14.5 retina CCTGCCTCCT (5) GATGGTGAAC (5) GGCCAGAGAC (4) TTGCAGCAAA 14.5 0.0145 E16.5 retina GGCCAGAGAC (4) TCAACAACAG (5) 5.4 0.0054 E18.5 retina GGCCAGAGAC (4) TTGCAGCAAA 7.3 0.0073 P0.5 retina GGCCAGAGAC (4) TTGCAGCAAA 5.9 0.0059 P2.5 retina CATTCCTTTG GGCCAGAGAC (4) TCAACAACAG (5) TTGCAGCAAA 12.4 0.0124 P4.5 retina AATATTAAAA (5) CATTCCTTTG TTGCAGCAAA 6 0.006 P6.5 retina CATTCCTTTG GATGGTGAAC (5) GGCCAGAGAC (4) TCAACAACAG (5) TTGCAGCAAA 11.7 0.0117 P10.5 crx- retina GATGGTGAAC (5) GGCCAGAGAC (4) TTGCAGCAAA 11.2 0.0112 P10.5 crx+ retina GGCCAGAGAC (4) TTGCAGCAAA 21.1 0.0211 Adult retinal CCTGCCTCCT (5) GGCCAGAGAC (4) TTGCAGCAAA 16.7 0.0167 ONL GATGGTGAAC (5) TTGCAGCAAA 23 0.023