Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4965	Lhx1	LIM homeobox protein 1	11	11 48.0 cM	16869
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex | zinc ion binding
Human Homolog	LHX1[LIM homeobox 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 37 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCCACGGGA (4) 16.3 0.0163 P8 Cb GC TTGAATAAAT (2) 8.2 0.0082 P8 Cb GC AAATTGTTAA 3.3 0.0033 P8 Cb GC AAAGTTTAAA (4) 1.6 0.0016 P8 Cb GC GAGTGGAGAG (3) 1.6 0.0016 Cb medulloblastoma GGCCACGGGA (4) 6.9 0.0069 Cb medulloblastoma AAAGTTTAAA (4) 2.3 0.0023 Cb medulloblastoma TTGAATAAAT (2) 2.3 0.0023 P8 GC+1d culture TTGAATAAAT (2) 8 0.008 P8 GC+1d culture GGCCACGGGA (4) 2.3 0.0023 P8 GC+1d culture AAATTGTTAA 1.1 0.0011 P8 GC+1d culture GAGTGGAGAG (3) 1.1 0.0011 P8 GC+SHH+1d culture TTGAATAAAT (2) 12.9 0.0129 P8 GC+SHH+1d culture GAGTGGAGAG (3) 3.5 0.0035 P8 GC+SHH+1d culture AAAGTTTAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GGCCACGGGA (4) 1.2 0.0012 3T3 fibroblasts GAGTGGAGAG (3) 7 0.007 P1 cortex TTGAATAAAT (2) 4.5 0.0045 Hypothalamus AAATTGTTAA 1.8 0.0018 Hypothalamus GAGTGGAGAG (3) 1.8 0.0018 Hypothalamus GGCCACGGGA (4) 1.8 0.0018 Hypothalamus TTGAATAAAT (2) 1.8 0.0018 E12.5 retina GAGTGGAGAG (3) 1.9 0.0019 E16.5 retina GAGTGGAGAG (3) 3.6 0.0036 P0.5 retina GAGTGGAGAG (3) 3.9 0.0039 P2.5 retina TTGAATAAAT (2) 3.5 0.0035 P2.5 retina AAATTGTTAA 1.8 0.0018 P4.5 retina GAGTGGAGAG (3) 2 0.002 P6.5 retina TTGAATAAAT (2) 3.3 0.0033 P6.5 retina GAGTGGAGAG (3) 1.7 0.0017 P10.5 crx- retina GAGTGGAGAG (3) 3.7 0.0037 P10.5 crx- retina AAAGTTTAAA (4) 1.9 0.0019 P10.5 crx+ retina GGCCACGGGA (4) 3.8 0.0038 Adult retinal AAAGTTTAAA (4) 1.9 0.0019 Adult retinal GGCCACGGGA (4) 1.9 0.0019 ONL AAAGTTTAAA (4) 1.9 0.0019 ONL TTGAATAAAT (2) 1.9 0.0019