Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4965	Lhx1	LIM homeobox protein 1	11	11 48.0 cM	16869
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex | zinc ion binding
Human Homolog	LHX1[LIM homeobox 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 37 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAGTTTAAA AAATTGTTAA GAGTGGAGAG GGCCACGGGA (2) TTGAATAAAT (2) 31 0.031 Cb medulloblastoma AAAGTTTAAA GGCCACGGGA (2) TTGAATAAAT (2) 11.5 0.0115 P8 GC+1d culture AAATTGTTAA GAGTGGAGAG GGCCACGGGA (2) TTGAATAAAT (2) 12.5 0.0125 P8 GC+SHH+1d culture AAAGTTTAAA GAGTGGAGAG GGCCACGGGA (2) TTGAATAAAT (2) 19.9 0.0199 3T3 fibroblasts GAGTGGAGAG 7 0.007 P1 cortex TTGAATAAAT (2) 4.5 0.0045 Hypothalamus AAATTGTTAA GAGTGGAGAG GGCCACGGGA (2) TTGAATAAAT (2) 7.2 0.0072 E12.5 retina GAGTGGAGAG 1.9 0.0019 E16.5 retina GAGTGGAGAG 3.6 0.0036 P0.5 retina GAGTGGAGAG 3.9 0.0039 P2.5 retina AAATTGTTAA TTGAATAAAT (2) 5.3 0.0053 P4.5 retina GAGTGGAGAG 2 0.002 P6.5 retina GAGTGGAGAG TTGAATAAAT (2) 5 0.005 P10.5 crx- retina AAAGTTTAAA GAGTGGAGAG 5.6 0.0056 P10.5 crx+ retina GGCCACGGGA (2) 3.8 0.0038 Adult retinal AAAGTTTAAA GGCCACGGGA (2) 3.8 0.0038 ONL AAAGTTTAAA TTGAATAAAT (2) 3.8 0.0038