Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5246	Ppia	peptidylprolyl isomerase A	11	11 1.0 cM	268373
Gene Ontology	cytosol | isomerase activity | peptidyl-prolyl cis-trans isomerase activity | protein folding
Human Homolog	PPIA[peptidylprolyl isomerase A (cyclophilin A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGCGTTTTG 124 0.124 P8 Cb GC TGGTCTTTGG 8.2 0.0082 P8 Cb GC TGCCAGGGTG 6.5 0.0065 P8 Cb GC GCAAATGCTG 4.9 0.0049 P8 Cb GC CTTGCCATCC 3.3 0.0033 P8 Cb GC GAGCGCTTTG 3.3 0.0033 P8 Cb GC TAGCGTTTTG 3.3 0.0033 P8 Cb GC AGCGTTTTGG 1.6 0.0016 P8 Cb GC GTCAACCCCA 1.6 0.0016 Cb medulloblastoma GAGCGTTTTG 85.6 0.0856 Cb medulloblastoma GCAAATGCTG 11.6 0.0116 Cb medulloblastoma CCTTCTTTCA 4.6 0.0046 Cb medulloblastoma AACATTGTGG 2.3 0.0023 Cb medulloblastoma GACAAGATGC (2) 2.3 0.0023 P8 GC+1d culture GAGCGTTTTG 143.8 0.1438 P8 GC+1d culture TCCTGTAATC 3.4 0.0034 P8 GC+1d culture GACAAGATGC (2) 2.3 0.0023 P8 GC+1d culture GAGCATTTTG 2.3 0.0023 P8 GC+1d culture TGCCAGGGTG 2.3 0.0023 P8 GC+1d culture CTTGCCATCC 1.1 0.0011 P8 GC+1d culture GAGCGCTTTG 1.1 0.0011 P8 GC+1d culture GCAAATGCTG 1.1 0.0011 P8 GC+SHH+1d culture GAGCGTTTTG 130 0.13 P8 GC+SHH+1d culture GAGCGCTTTG 2.3 0.0023 P8 GC+SHH+1d culture TGCCAGGGTG 2.3 0.0023 P8 GC+SHH+1d culture CCTTCTTTCA 1.2 0.0012 P8 GC+SHH+1d culture CTTGCCATCC 1.2 0.0012 P8 GC+SHH+1d culture GAGCGTTCTG 1.2 0.0012 P8 GC+SHH+1d culture GCAAATGCTG 1.2 0.0012 P8 GC+SHH+1d culture TGGTCTTTGG 1.2 0.0012 3T3 fibroblasts GAGCGTTTTG 399.6 0.3996 3T3 fibroblasts GAGCGTTTGG 7 0.007 3T3 fibroblasts GACAAGATGC (2) 3.5 0.0035 E15 cortex GAGCGTTTTG 222.7 0.2227 E15 cortex TAGCGTTTTG 9.9 0.0099 E15 cortex AACATTGTGG 4.9 0.0049 E15 cortex GAGCCGTTTT 4.9 0.0049 P1 cortex GAGCGTTTTG 159.1 0.1591 P1 cortex GAGCGTTCTG 4.5 0.0045 Hypothalamus GAGCGTTTTG 77.9 0.0779 Hypothalamus TGCCAGGGTG 9.1 0.0091 Hypothalamus GACAAGATGC (2) 7.2 0.0072 Hypothalamus GCAAATGCTG 7.2 0.0072 Hypothalamus TGGTCTTTGG 3.6 0.0036 Hypothalamus GTCAACCCCA 1.8 0.0018 E12.5 retina GAGCGTTTTG 114.5 0.1145 E12.5 retina GTCAACCCCA 3.8 0.0038 E12.5 retina CCTTCTTTCA 1.9 0.0019 E12.5 retina CTTGCCATCC 1.9 0.0019 E12.5 retina GAGCGCTTTG 1.9 0.0019 E14.5 retina GAGCGTTTTG 87.5 0.0875 E14.5 retina GACAAGATGC (2) 3.6 0.0036 E14.5 retina CCTTCTTTCA 1.8 0.0018 E14.5 retina CTTGCCATCC 1.8 0.0018 E14.5 retina GTCAACCCCA 1.8 0.0018 E16.5 retina GAGCGTTTTG 179.3 0.1793 E16.5 retina TGCCAGGGTG 25.4 0.0254 E16.5 retina GCAAATGCTG 9.1 0.0091 E16.5 retina GACAAGATGC (2) 7.2 0.0072 E16.5 retina GTCAACCCCA 3.6 0.0036 E16.5 retina AACATTGTGG 1.8 0.0018 E16.5 retina CCTTCTTTCA 1.8 0.0018 E16.5 retina CTTGCCATCC 1.8 0.0018 E16.5 retina GAGCCGTTTT 1.8 0.0018 E16.5 retina GAGCGTTTGG 1.8 0.0018 E18.5 retina GAGCGTTTTG 63.7 0.0637 E18.5 retina CTTGCCATCC 5.5 0.0055 E18.5 retina TGGTCTTTGG 5.5 0.0055 E18.5 retina GCAAATGCTG 3.6 0.0036 E18.5 retina GAGCGTTTGG 1.8 0.0018 P0.5 retina GAGCGTTTTG 296.3 0.2963 P0.5 retina GCAAATGCTG 5.9 0.0059 P0.5 retina CTTGCCATCC 3.9 0.0039 P0.5 retina GAGCCGTTTT 3.9 0.0039 P0.5 retina GAGCGTTCTG 3.9 0.0039 P0.5 retina GAGCGTTTGG 3.9 0.0039 P0.5 retina TGGTCTTTGG 3.9 0.0039 P0.5 retina CCTTCTTTCA 2 0.002 P0.5 retina GAGCGTTTTT 2 0.002 P0.5 retina TGCCAGGGTG 2 0.002 P2.5 retina GAGCGTTTTG 128.5 0.1285 P2.5 retina GAGCCGTTTT 5.3 0.0053 P2.5 retina TAGCGTTTTG 3.5 0.0035 P2.5 retina CCTTCTTTCA 1.8 0.0018 P2.5 retina CTTGCCATCC 1.8 0.0018 P2.5 retina GACAAGATGC (2) 1.8 0.0018 P2.5 retina GAGCGCTTTG 1.8 0.0018 P2.5 retina GAGCGTTTGG 1.8 0.0018 P2.5 retina GTCAACCCCA 1.8 0.0018 P4.5 retina GAGCGTTTTG 73.3 0.0733 P4.5 retina CCTTCTTTCA 2 0.002 P4.5 retina GACAAGATGC (2) 2 0.002 P4.5 retina GAGCATTTTG 2 0.002 P4.5 retina GAGCCGTTTT 2 0.002 P6.5 retina GAGCGTTTTG 61.7 0.0617 P6.5 retina CCTTCTTTCA 3.3 0.0033 P6.5 retina AGCGTTTTGG 1.7 0.0017 P6.5 retina GCAAATGCTG 1.7 0.0017 P6.5 retina TGGTCTTTGG 1.7 0.0017 P10.5 crx- retina GAGCGTTTTG 405 0.405 P10.5 crx- retina CCTTCTTTCA 7.4 0.0074 P10.5 crx- retina GTCAACCCCA 7.4 0.0074 P10.5 crx- retina GCAAATGCTG 5.6 0.0056 P10.5 crx- retina GAGCCGTTTT 3.7 0.0037 P10.5 crx- retina TGCCAGGGTG 3.7 0.0037 P10.5 crx- retina AACATTGTGG 1.9 0.0019 P10.5 crx- retina AGCGTTTTGG 1.9 0.0019 P10.5 crx- retina CTTGCCATCC 1.9 0.0019 P10.5 crx- retina GACAAGATGC (2) 1.9 0.0019 P10.5 crx- retina GAGCGTTTTT 1.9 0.0019 P10.5 crx+ retina GAGCGTTTTG 174.9 0.1749 P10.5 crx+ retina GAGCCGTTTT 1.9 0.0019 P10.5 crx+ retina GAGCGCTTTG 1.9 0.0019 P10.5 crx+ retina GAGCGTTTTT 1.9 0.0019 P10.5 crx+ retina TCCTGTAATC 1.9 0.0019 P10.5 crx+ retina TGCCAGGGTG 1.9 0.0019 Adult retinal GAGCGTTTTG 98.1 0.0981 Adult retinal TGGTCTTTGG 3.7 0.0037 Adult retinal GAGCCGTTTT 1.9 0.0019 ONL GAGCGTTTTG 34.5 0.0345 ONL TCCTGTAATC 3.8 0.0038 ONL GACAAGATGC (2) 1.9 0.0019