Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5246	Ppia	peptidylprolyl isomerase A	11	11 1.0 cM	268373
Gene Ontology	cytosol | isomerase activity | peptidyl-prolyl cis-trans isomerase activity | protein folding
Human Homolog	PPIA[peptidylprolyl isomerase A (cyclophilin A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 249 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAG AATAAAAACT AGCGTTTTGG CAAGACTGAA (5) CTTGCCATCC GAACATTTTG (3) GAGCGCTTTG GAGCGTTTTG GCAAATGCTG GCTGCAGCAA GTCAACCCCA TAGCGTTTTG TCTGTAATCT (2) TGCCAGGGTG TGGAGTTGGA (2) TGGTCTCTGG (2) TGGTCTTTGG 205.6 0.2056 Cb medulloblastoma AAAAAAAAAG AACATTGTGG AATAAAAACT CCTTCTTTCA GACAAGATGC (2) GAGCGTCTTG GAGCGTTTTG GCAAATGCTG GTTTCGAAAA TCTGTAATCT (2) TGGAGTTGGA (2) 168.8 0.1688 P8 GC+1d culture AAAAAAAAAG AATAAAAACT ACAAAAACCA CAAGACTGAA (5) CTTGCCATCC GAACATTTTG (3) GACAAGATGC (2) GAGCATTTTG GAGCGCTTTG GAGCGTCTTG GAGCGTTTTG GCAAATGCTG GCTGCAGCAA GGACACTTAA TCCTGTAATC TCTGTAATCT (2) TGCCAGGGTG TGGAGTTGGA (2) 201.7 0.2017 P8 GC+SHH+1d culture AAAAAAAAAG AATAAAAACT AATCCTGGAA CCTTCTTTCA CTATTAAAAT CTTGCCATCC GAACATTTTG (3) GAGCGCTTTG GAGCGTCTTG GAGCGTTCTG GAGCGTTTTG GCAAATGCTG GCTGCAGCAA GGACACTTAA TGCCAGGGTG TGGAGTTGGA (2) TGGTCTCTGG (2) TGGTCTTTGG 201.7 0.2017 3T3 fibroblasts CCCCCACCAC (2) GACAAGATGC (2) GAGCGTTTGG GAGCGTTTTG 417.1 0.4171 E15 cortex AACATTGTGG AATAAAAACT CCCCCACCAC (2) GAACATTTTG (3) GAGCCGTTTT GAGCGTTTTG TAGCGTTTTG TGGAGTTGGA (2) TGGTCTCTGG (2) 271.9 0.2719 P1 cortex AAAAAAAAAG AATAAAAACT GAGCGTCTTG GAGCGTTCTG GAGCGTTTTG GAGTGTTTTG (2) GCTGCAGCAA 199.8 0.1998 Hypothalamus AAAAAAAAAG AATAAAAACT CAAGACTGAA (5) CTATTAAAAT GAACATTTTG (3) GACAAGATGC (2) GAGCGTTTTG GCAAATGCTG GCTGCAGCAA GTCAACCCCA TGCCAGGGTG TGGTCTTTGG 142.9 0.1429 E12.5 retina AATAAAAACT CAAGACTGAA (5) CCTTCTTTCA CTTGCCATCC GAGCGCTTTG GAGCGTTTTG GCTGCAGCAA GGTCCTTATC (2) GTCAACCCCA TGGAGTTGGA (2) 154.1 0.1541 E14.5 retina AATAAAAACT AATCCTGGAA ACAAAAACCA CCTTCTTTCA CTTGCCATCC GACAAGATGC (2) GAGCGTTTTG GTCAACCCCA TCTCTAGTGA TCTGTAATCT (2) TGGAGTTGGA (2) 134.7 0.1347 E16.5 retina AACATTGTGG AATAAAAACT AATCCTGGAA CCTTCTTTCA CTATTAAAAT CTTGCCATCC GAACATTTTG (3) GACAAGATGC (2) GAGCCGTTTT GAGCGTTTGG GAGCGTTTTG GCAAATGCTG GGACACTTAA GGTCCTTATC (2) GTCAACCCCA TCTGTAATCT (2) TGCCAGGGTG TGGAGTTGGA (2) 278.8 0.2788 E18.5 retina AAAAAAAAAG AATAAAAACT AATCCTGGAA CTTGCCATCC GAACATTTTG (3) GAGCGTTTGG GAGCGTTTTG GCAAATGCTG GCTGCAGCAA TGGAGTTGGA (2) TGGTCTTTGG 142.1 0.1421 P0.5 retina AATAAAAACT CAAGACTGAA (5) CCTTCTTTCA CTTGCCATCC GAACATTTTG (3) GAGCCGTTTT GAGCGTCTTG GAGCGTTCTG GAGCGTTTGG GAGCGTTTTG GAGCGTTTTT GAGTGTTTTG (2) GCAAATGCTG GCTGCAGCAA TGCCAGGGTG TGGAGTTGGA (2) TGGTCTTTGG 365.1 0.3651 P2.5 retina AAAAAAAAAG AATAAAAACT AATCCTGGAA CAAGACTGAA (5) CCTTCTTTCA CTATTAAAAT CTTGCCATCC GAACATTTTG (3) GACAAGATGC (2) GAGCCGTTTT GAGCGCTTTG GAGCGTCTTG GAGCGTTTGG GAGCGTTTTG GCTGCAGCAA GGTCCTTATC (2) GTCAACCCCA TAGCGTTTTG TGGAGTTGGA (2) 206.3 0.2063 P4.5 retina AAAAAAAAAG AATAAAAACT CAAGACTGAA (5) CCTTCTTTCA GACAAGATGC (2) GAGCATTTTG GAGCCGTTTT GAGCGTTTTG GCTGCAGCAA TCTCTAGTGA TGGAGTTGGA (2) 146.8 0.1468 P6.5 retina AAAAAAAAAG AATAAAAACT AATCCTGGAA AGCGTTTTGG CCTTCTTTCA GAGCGTTTTG GCAAATGCTG GCTGCAGCAA TGGAGTTGGA (2) TGGTCTTTGG 115.1 0.1151 P10.5 crx- retina AAAAAAAAAG AACATTGTGG AATAAAAACT AATCCTGGAA AGCGTTTTGG CAAGACTGAA (5) CCTTCTTTCA CTTGCCATCC GACAAGATGC (2) GAGCCGTTTT GAGCGTTTTG GAGCGTTTTT GAGTGTTTTG (2) GCAAATGCTG GCTGCAGCAA GGTCCTTATC (2) GTCAACCCCA GTTTCGAAAA TCTCTAGTGA TCTGTAATCT (2) TGCCAGGGTG TGGAGTTGGA (2) 483.5 0.4835 P10.5 crx+ retina AAAAAAAAAG AATAAAAACT CAAGACTGAA (5) GAGCCGTTTT GAGCGCTTTG GAGCGTTTTG GAGCGTTTTT GCTGCAGCAA GGTCCTTATC (2) TCCTGTAATC TGCCAGGGTG TGGAGTTGGA (2) 226.6 0.2266 Adult retinal AAAAAAAAAG AATAAAAACT GAGCCGTTTT GAGCGTTTTG TGGTCTTTGG 111.2 0.1112 ONL AAAAAAAAAG AATAAAAACT GACAAGATGC (2) GAGCGTTTTG GGTCCTTATC (2) TCCTGTAATC TCTGTAATCT (2) 67 0.067