Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5291	Rps5	ribosomal protein S5	7		20103
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | ribosome biogenesis | small ribosomal subunit | structural constituent of ribosome
Human Homolog	RPS5[ribosomal protein S5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 137 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTGAGAT (3) 53.8 0.0538 P8 Cb GC AATGATGCCT (2) 9.8 0.0098 P8 Cb GC AGCCTACAGA (5) 3.3 0.0033 P8 Cb GC ACCTCATTTA 1.6 0.0016 P8 Cb GC CCTCTTCCCC (4) 1.6 0.0016 P8 Cb GC CCTTTGGGAT (3) 1.6 0.0016 P8 Cb GC GAAGGAAAAA (11) 1.6 0.0016 P8 Cb GC GAGTTAGTAA 1.6 0.0016 P8 Cb GC GCCACCGCCC (4) 1.6 0.0016 P8 Cb GC TACTGCCTGG (5) 1.6 0.0016 P8 Cb GC TCAACACGCA (3) 1.6 0.0016 Cb medulloblastoma AGCCTACAGA (5) 6.9 0.0069 Cb medulloblastoma CCTCTTCCCC (4) 6.9 0.0069 Cb medulloblastoma CCTTTGAGAT (3) 6.9 0.0069 Cb medulloblastoma GAGTTAGTAA 4.6 0.0046 Cb medulloblastoma AGATGAGTCA (3) 2.3 0.0023 Cb medulloblastoma CAGAGCCTGT (2) 2.3 0.0023 Cb medulloblastoma GAAGGAAAAA (11) 2.3 0.0023 Cb medulloblastoma GCCACCGCCC (4) 2.3 0.0023 P8 GC+1d culture CCTTTGAGAT (3) 49.1 0.0491 P8 GC+1d culture GAGTTAGTAA 8 0.008 P8 GC+1d culture AATGATGCCT (2) 6.8 0.0068 P8 GC+1d culture CCTCTTCCCC (4) 5.7 0.0057 P8 GC+1d culture GAGCGTGTGC (2) 3.4 0.0034 P8 GC+SHH+1d culture CCTTTGAGAT (3) 50.3 0.0503 P8 GC+SHH+1d culture AATGATGCCT (2) 11.7 0.0117 P8 GC+SHH+1d culture GAGTTAGTAA 5.9 0.0059 P8 GC+SHH+1d culture AGCCTACAGA (5) 1.2 0.0012 P8 GC+SHH+1d culture CAGAGCCTGT (2) 1.2 0.0012 P8 GC+SHH+1d culture CCTCTTCCCC (4) 1.2 0.0012 P8 GC+SHH+1d culture GAAGGAAAAA (11) 1.2 0.0012 3T3 fibroblasts CCTTTGAGAT (3) 77.1 0.0771 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AATGATGCCT (2) 7 0.007 3T3 fibroblasts TCAACACGCA (3) 3.5 0.0035 E15 cortex CCTTTGAGAT (3) 34.6 0.0346 E15 cortex GAAGGAAAAA (11) 9.9 0.0099 E15 cortex AGATGAGTCA (3) 4.9 0.0049 E15 cortex AGCCTACAGA (5) 4.9 0.0049 E15 cortex CCCTTGAGAT (3) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TACTGCCTGG (5) 4.9 0.0049 P1 cortex CCTTTGAGAT (3) 45.5 0.0455 P1 cortex AATGATGCCT (2) 18.2 0.0182 P1 cortex AGATGAGTCA (3) 4.5 0.0045 P1 cortex GAAGGAAAAA (11) 4.5 0.0045 P1 cortex TCAACACGCA (3) 4.5 0.0045 Hypothalamus AGCCTACAGA (5) 5.4 0.0054 Hypothalamus AACTCCCTCA (3) 1.8 0.0018 Hypothalamus CCTTTGAGAT (3) 1.8 0.0018 Hypothalamus CCTTTGGGAT (3) 1.8 0.0018 Hypothalamus GAGTTAGTAA 1.8 0.0018 E12.5 retina CCTTTGAGAT (3) 69.5 0.0695 E12.5 retina AATGATGCCT (2) 15 0.015 E12.5 retina AGCCTACAGA (5) 7.5 0.0075 E12.5 retina GAAGGAAAAA (11) 5.6 0.0056 E12.5 retina CCTTTGGGAT (3) 1.9 0.0019 E12.5 retina GAGTTAGTAA 1.9 0.0019 E12.5 retina TCAACACGCA (3) 1.9 0.0019 E14.5 retina AATGATGCCT (2) 10.9 0.0109 E14.5 retina CCTTTGAGAT (3) 7.3 0.0073 E14.5 retina ACCTCATTTA 1.8 0.0018 E14.5 retina AGATGAGTCA (3) 1.8 0.0018 E14.5 retina GAAGGAAAAA (11) 1.8 0.0018 E16.5 retina CCTTTGAGAT (3) 19.9 0.0199 E16.5 retina AATGATGCCT (2) 14.5 0.0145 E16.5 retina AGCCTACAGA (5) 3.6 0.0036 E16.5 retina AGATGAGTCA (3) 1.8 0.0018 E16.5 retina ATGAGCTTTT (8) 1.8 0.0018 E16.5 retina CCTCTTCCCC (4) 1.8 0.0018 E16.5 retina GAAGGAAAAA (11) 1.8 0.0018 E16.5 retina GAGTTAGTAA 1.8 0.0018 E18.5 retina GAAGGAAAAA (11) 16.4 0.0164 E18.5 retina CCTTTGAGAT (3) 7.3 0.0073 E18.5 retina AATGATGCCT (2) 1.8 0.0018 E18.5 retina ATGAGCTTTT (8) 1.8 0.0018 E18.5 retina ATGGCATTTT (2) 1.8 0.0018 E18.5 retina CCTCTTCCCC (4) 1.8 0.0018 E18.5 retina GAGTTAGTAA 1.8 0.0018 E18.5 retina TCAACACGCA (3) 1.8 0.0018 P0.5 retina CCTTTGAGAT (3) 70.7 0.0707 P0.5 retina AATGATGCCT (2) 23.6 0.0236 P0.5 retina AGCCTACAGA (5) 3.9 0.0039 P0.5 retina GAAGGAAAAA (11) 3.9 0.0039 P0.5 retina GAGTTAGTAA 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGATGAGTCA (3) 2 0.002 P0.5 retina CCTTTGGGAT (3) 2 0.002 P0.5 retina TACTGCCTGG (5) 2 0.002 P2.5 retina AATGATGCCT (2) 7 0.007 P2.5 retina CCTCTTCCCC (4) 7 0.007 P2.5 retina CCTTTGAGAT (3) 7 0.007 P2.5 retina ACCTCATTTA 1.8 0.0018 P2.5 retina AGATGAGTCA (3) 1.8 0.0018 P2.5 retina GAAGGAAAAA (11) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina CCTTTGAGAT (3) 21.8 0.0218 P4.5 retina AATGATGCCT (2) 9.9 0.0099 P4.5 retina CCTCTTCCCC (4) 7.9 0.0079 P4.5 retina GAAGGAAAAA (11) 5.9 0.0059 P4.5 retina GAGTTAGTAA 4 0.004 P4.5 retina AACTCCCTCA (3) 2 0.002 P4.5 retina AGATGAGTCA (3) 2 0.002 P4.5 retina AGCCTACAGA (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina CCTCTTCCCC (4) 5 0.005 P6.5 retina CCTTTGAGAT (3) 5 0.005 P6.5 retina AATGATGCCT (2) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina ACCTCATTTA 1.7 0.0017 P6.5 retina CCCTTGAGAT (3) 1.7 0.0017 P10.5 crx- retina CCTTTGAGAT (3) 50.2 0.0502 P10.5 crx- retina AATGATGCCT (2) 5.6 0.0056 P10.5 crx- retina CCTCTTCCCC (4) 5.6 0.0056 P10.5 crx- retina GAGTTAGTAA 1.9 0.0019 P10.5 crx+ retina CCTTTGAGAT (3) 11.5 0.0115 P10.5 crx+ retina AATGATGCCT (2) 9.6 0.0096 P10.5 crx+ retina AGCCTACAGA (5) 3.8 0.0038 P10.5 crx+ retina CCTCTTCCCC (4) 3.8 0.0038 P10.5 crx+ retina ATGAGCTTTT (8) 1.9 0.0019 P10.5 crx+ retina CCCTTGAGAT (3) 1.9 0.0019 P10.5 crx+ retina GAAGGAAAAA (11) 1.9 0.0019 Adult retinal CCTTTGAGAT (3) 14.8 0.0148 Adult retinal ATGAACACTG (30) 11.1 0.0111 Adult retinal AATGATGCCT (2) 5.6 0.0056 Adult retinal CCTCTTCCCC (4) 3.7 0.0037 Adult retinal AACTCCCTCA (3) 1.9 0.0019 Adult retinal AGCCTACAGA (5) 1.9 0.0019 Adult retinal CAGAGCCTGT (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL ATGAACACTG (30) 13.4 0.0134 ONL CCTTTGAGAT (3) 13.4 0.0134 ONL CCTCTTCCCC (4) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ATGGCATTTT (2) 3.8 0.0038 ONL GAAGGAAAAA (11) 3.8 0.0038 ONL AGCCTACAGA (5) 1.9 0.0019