Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.56987	Opn1sw	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	6		12057
Gene Ontology	G-protein coupled photoreceptor activity | G-protein coupled receptor activity | G-protein coupled receptor protein signaling pathway | integral to membrane | photoreceptor outer segment | phototransduction | rhodopsin-like receptor activity | vision
Human Homolog	OPN1SW[opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 36 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGAGAATTG (2) 1.6 0.0016 P8 Cb GC TCTATAGAGT (3) 1.6 0.0016 P8 GC+1d culture TCTATAGAGT (3) 11.4 0.0114 P8 GC+1d culture GAGAGAATTG (2) 2.3 0.0023 P8 GC+SHH+1d culture TCTATAGAGT (3) 12.9 0.0129 P8 GC+SHH+1d culture GAGAGAATTG (2) 1.2 0.0012 3T3 fibroblasts TCTATAGAGT (3) 10.5 0.0105 3T3 fibroblasts GAGAGAATTG (2) 3.5 0.0035 E15 cortex GAGAGAATTG (2) 4.9 0.0049 Hypothalamus TCTATAGAGT (3) 1.8 0.0018 E12.5 retina TCTATAGAGT (3) 11.3 0.0113 E12.5 retina GAGAGAATTG (2) 1.9 0.0019 E14.5 retina TCTATAGAGT (3) 5.5 0.0055 E14.5 retina GAGAGAATTG (2) 1.8 0.0018 E16.5 retina TCTATAGAGT (3) 7.2 0.0072 E16.5 retina GAGAGAATTG (2) 1.8 0.0018 E18.5 retina TCTATAGAGT (3) 5.5 0.0055 E18.5 retina GAGAGAATTG (2) 1.8 0.0018 E18.5 retina GGGCAGTGCC (3) 1.8 0.0018 P0.5 retina TCTATAGAGT (3) 5.9 0.0059 P2.5 retina CCAAGCTTAT (2) 3.5 0.0035 P2.5 retina TCTATAGAGT (3) 3.5 0.0035 P2.5 retina GAGAGAATTG (2) 1.8 0.0018 P4.5 retina GAGAGAATTG (2) 2 0.002 P4.5 retina TCTATAGAGT (3) 2 0.002 P6.5 retina TCTATAGAGT (3) 11.7 0.0117 P6.5 retina GGGCAGTGCC (3) 3.3 0.0033 P6.5 retina CCAAGCTTAT (2) 1.7 0.0017 P10.5 crx- retina TCTATAGAGT (3) 3.7 0.0037 P10.5 crx+ retina GGGCAGTGCC (3) 13.5 0.0135 P10.5 crx+ retina TCTATAGAGT (3) 5.8 0.0058 P10.5 crx+ retina CCAAGCTTAT (2) 1.9 0.0019 Adult retinal GGGCAGTGCC (3) 9.3 0.0093 Adult retinal CCAAGCTTAT (2) 3.7 0.0037 ONL GGGCAGTGCC (3) 30.6 0.0306 ONL CCAAGCTTAT (2) 15.3 0.0153