Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.56987	Opn1sw	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	6		12057
Gene Ontology	G-protein coupled photoreceptor activity | G-protein coupled receptor activity | G-protein coupled receptor protein signaling pathway | integral to membrane | photoreceptor outer segment | phototransduction | rhodopsin-like receptor activity | vision
Human Homolog	OPN1SW[opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 36 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGAGAATTG TCTATAGAGT (3) 3.2 0.0032 P8 GC+1d culture GAGAGAATTG TCTATAGAGT (3) 13.7 0.0137 P8 GC+SHH+1d culture GAGAGAATTG TCTATAGAGT (3) 14.1 0.0141 3T3 fibroblasts GAGAGAATTG TCTATAGAGT (3) 14 0.014 E15 cortex GAGAGAATTG 4.9 0.0049 Hypothalamus TCTATAGAGT (3) 1.8 0.0018 E12.5 retina GAGAGAATTG TCTATAGAGT (3) 13.2 0.0132 E14.5 retina GAGAGAATTG TCTATAGAGT (3) 7.3 0.0073 E16.5 retina GAGAGAATTG TCTATAGAGT (3) 9 0.009 E18.5 retina GAGAGAATTG GGGCAGTGCC TCTATAGAGT (3) 9.1 0.0091 P0.5 retina TCTATAGAGT (3) 5.9 0.0059 P2.5 retina CCAAGCTTAT GAGAGAATTG TCTATAGAGT (3) 8.8 0.0088 P4.5 retina GAGAGAATTG TCTATAGAGT (3) 4 0.004 P6.5 retina CCAAGCTTAT GGGCAGTGCC TCTATAGAGT (3) 16.7 0.0167 P10.5 crx- retina TCTATAGAGT (3) 3.7 0.0037 P10.5 crx+ retina CCAAGCTTAT GGGCAGTGCC TCTATAGAGT (3) 21.2 0.0212 Adult retinal CCAAGCTTAT GGGCAGTGCC 13 0.013 ONL CCAAGCTTAT GGGCAGTGCC 45.9 0.0459