Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.61526	Hmgcs1	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	13	13 66.0 cM	208715
Gene Ontology	acetyl-CoA metabolism | C21-steroid hormone biosynthesis | cholesterol biosynthesis | cytoplasm | DNA binding | hydroxymethylglutaryl-CoA synthase activity | lyase activity | nucleus | regulation of transcription, DNA-dependent | sex differentiation | transcription factor activity | transcription factor complex
Human Homolog	HMGCS1[3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATCTTTTTC (2) CACAATCTCC (4) CAGTTTAGTT CTCCCTGTTG TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC TTAGCAAGTT 32.6 0.0326 Cb medulloblastoma CAGTTTAGTT CTCCCTGTTG GGGGAAAAAA (4) TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC TTAGCAAGTT 25.3 0.0253 P8 GC+1d culture AATCTTTTTC (2) AGCCTCAGAC CACAATCTCC (4) CACCATCTCC CAGTTTAGTT CTCCCTGTTG GGGGAAAAAA (4) TAATTTTTTT (2) TGAAATTTTC TGGTAGTTTT TGTGTGCAAA TTAGCAAGTT 58.1 0.0581 P8 GC+SHH+1d culture AATCTTTTTC (2) AGCCTCAGAC AGCTGAATAA CACAATCTCC (4) CACCATCTCC CAGTTTAGTT CTCCCTGTTG GTCTGATTAG TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC TGGTAGTTTT TGTGTGCAAA TTAGCAAGTT 56.3 0.0563 3T3 fibroblasts CACAATCTCC (4) CTCCCTGTTG 21 0.021 E15 cortex AAGCTCAAGA (2) GGGGAAAAAA (4) 9.8 0.0098 P1 cortex GTCTGATTAG TAATTTTTTT (2) 31.8 0.0318 Hypothalamus AGCCTCAGAC CAGTTTAGTT TAATTTTTTT (2) TGAAATTTTC TGGTAGTTTT TGTGTGCAAA 25.3 0.0253 E12.5 retina AAGCTCAAGA (2) CAGTTTAGTT CTCCCTGTTG GCAAGGCAAA GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC TGGTAGTTTT 52.7 0.0527 E14.5 retina AAGCTCAAGA (2) AATCTTTTTC (2) AGCCTCAGAC AGCTGAATAA CACCATCTCC CAGTTTAGTT CTCCCTGTTG GCTGAAGCTT TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC TGGTAGTTTT 50.8 0.0508 E16.5 retina AATCTTTTTC (2) AGCCTCAGAC CAGTTTAGTT CTCCCTGTTG GCCAGCCCCT (2) GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TACACAGCAC (2) TGAAATTTTC 43.4 0.0434 E18.5 retina AGCCTCAGAC CACCATCTCC CAGTTTAGTT CTCCCTGTTG GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TACACAGCAC (2) TGGTAGTTTT TTAGCAAGTT 45.2 0.0452 P0.5 retina CACAATCTCC (4) CTCCCTGTTG GCCAGCCCCT (2) TAATTTTTTT (2) TACACAGCAC (2) 21.7 0.0217 P2.5 retina AAGCTCAAGA (2) AATCTTTTTC (2) AGCTGAATAA CAGTTTAGTT CTCCCTGTTG GCTGAAGCTT TAATTTTTTT (2) TACACAGCAC (2) TTAGCAAGTT 38.9 0.0389 P4.5 retina AATCTTTTTC (2) CACAATCTCC (4) CAGTTTAGTT CTCCCTGTTG GCAAGGCAAA TAATTTTTTT (2) 27.9 0.0279 P6.5 retina AATCTTTTTC (2) CACAATCTCC (4) CTCCCTGTTG GGGGAAAAAA (4) TAATTTTTTT (2) TACACAGCAC (2) TTAGCAAGTT 20.1 0.0201 P10.5 crx- retina AATCTTTTTC (2) CACAATCTCC (4) CTCCCTGTTG GCTGAAGCTT TAATTTTTTT (2) TACACAGCAC (2) TGTGTGCAAA 22.5 0.0225 P10.5 crx+ retina CTCCCTGTTG GTCTGATTAG TAATTTTTTT (2) TGAAATTTTC 13.4 0.0134 Adult retinal GCAAGGCAAA GCCAGCCCCT (2) TAATTTTTTT (2) TGAAATTTTC TGTGTGCAAA TTAGCAAGTT 13.2 0.0132 ONL AAGCTCAAGA (2) GCAAGGCAAA TAATTTTTTT (2) 13.4 0.0134