Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.641	Atf4	activating transcription factor 4	15	15 43.3 cM	11911
Gene Ontology	DNA binding | gluconeogenesis | nucleus | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | specific RNA polymerase II transcription factor activity | transcription factor complex | transcriptional activator activity
Human Homolog	ATF4[activating transcription factor 4 (tax-responsive enhancer element B67)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCTTGTTTC 9.8 0.0098 P8 Cb GC TGTAAAGGAG 9.8 0.0098 P8 Cb GC TGATGCCAAT (2) 8.2 0.0082 P8 Cb GC GCGTATTAGA 4.9 0.0049 P8 Cb GC GTGGCCGCAA (3) 4.9 0.0049 P8 Cb GC TTTTTAAAAT (7) 3.3 0.0033 P8 Cb GC ACCAAGAGTC (2) 1.6 0.0016 P8 Cb GC CTTTTTTTCT (9) 1.6 0.0016 Cb medulloblastoma TGTAAAGGAG 6.9 0.0069 Cb medulloblastoma ACCAAGAGTC (2) 4.6 0.0046 Cb medulloblastoma CTGCTCCGTT (3) 4.6 0.0046 Cb medulloblastoma GCGCTCTTCA 4.6 0.0046 Cb medulloblastoma TGATGCCAAT (2) 4.6 0.0046 Cb medulloblastoma CTCTTGTTTC 2.3 0.0023 Cb medulloblastoma CTTTTTTTCT (9) 2.3 0.0023 P8 GC+1d culture TGTAAAGGAG 17.1 0.0171 P8 GC+1d culture TGATGCCAAT (2) 12.6 0.0126 P8 GC+1d culture CTCTTGTTTC 8 0.008 P8 GC+1d culture ACCAAGAGTC (2) 4.6 0.0046 P8 GC+1d culture GTGGCCGCAA (3) 2.3 0.0023 P8 GC+1d culture GTAGAGAACT (2) 1.1 0.0011 P8 GC+1d culture TGTAAAGAAG (2) 1.1 0.0011 P8 GC+1d culture TTTTTAAAAT (7) 1.1 0.0011 P8 GC+SHH+1d culture TGATGCCAAT (2) 8.2 0.0082 P8 GC+SHH+1d culture TGTAAAGGAG 7 0.007 P8 GC+SHH+1d culture CTGCTCCGTT (3) 5.9 0.0059 P8 GC+SHH+1d culture CTCTTGTTTC 4.7 0.0047 P8 GC+SHH+1d culture TTTTTAAAAT (7) 3.5 0.0035 P8 GC+SHH+1d culture ACCAAGAGTC (2) 1.2 0.0012 P8 GC+SHH+1d culture CTTTTTTTCT (9) 1.2 0.0012 3T3 fibroblasts TGTAAAGGAG 21 0.021 3T3 fibroblasts GTGGCCGCAA (3) 10.5 0.0105 3T3 fibroblasts AGCGGGGGCA (3) 3.5 0.0035 3T3 fibroblasts TGTAAAGAAG (2) 3.5 0.0035 E15 cortex TGATGCCAAT (2) 4.9 0.0049 E15 cortex TGTAAAGGAG 4.9 0.0049 P1 cortex TGTAAAGGAG 9.1 0.0091 P1 cortex GTGGCCGCAA (3) 4.5 0.0045 P1 cortex TGTAAAGAAG (2) 4.5 0.0045 Hypothalamus CTGCTCCGTT (3) 27.2 0.0272 Hypothalamus TGTAAAGGAG 5.4 0.0054 Hypothalamus CTTTTTTTCT (9) 1.8 0.0018 Hypothalamus TGTAAAGAAG (2) 1.8 0.0018 E12.5 retina TGATGCCAAT (2) 9.4 0.0094 E12.5 retina CCAGATGAAG (4) 3.8 0.0038 E12.5 retina TGTAAAGGAG 3.8 0.0038 E12.5 retina TTTTTAAAAT (7) 3.8 0.0038 E12.5 retina ACCAAGAGTC (2) 1.9 0.0019 E12.5 retina CTGCTCCGTT (3) 1.9 0.0019 E14.5 retina CTGCTCCGTT (3) 3.6 0.0036 E14.5 retina ACCAAGAGTC (2) 1.8 0.0018 E14.5 retina CCAGATGAAG (4) 1.8 0.0018 E14.5 retina TGATGCCAAT (2) 1.8 0.0018 E16.5 retina TTTTTAAAAT (7) 5.4 0.0054 E16.5 retina GTAGAGAACT (2) 3.6 0.0036 E16.5 retina TGATGCCAAT (2) 3.6 0.0036 E16.5 retina CCAGATGAAG (4) 1.8 0.0018 E16.5 retina CTCTTGTTTC 1.8 0.0018 E16.5 retina CTGCTCCGTT (3) 1.8 0.0018 E16.5 retina CTTTTTTTCT (9) 1.8 0.0018 E16.5 retina GTGGCCGCAA (3) 1.8 0.0018 E16.5 retina TGTAAAGGAG 1.8 0.0018 E18.5 retina CTGCTCCGTT (3) 5.5 0.0055 E18.5 retina TGTAAAGGAG 5.5 0.0055 E18.5 retina TGATGCCAAT (2) 3.6 0.0036 E18.5 retina CCAGATGAAG (4) 1.8 0.0018 E18.5 retina GTAGAGAACT (2) 1.8 0.0018 E18.5 retina GTGGCCGCAA (3) 1.8 0.0018 E18.5 retina TTTTTAAAAT (7) 1.8 0.0018 P0.5 retina TGATGCCAAT (2) 5.9 0.0059 P0.5 retina TGTAAAGGAG 5.9 0.0059 P0.5 retina CTGCTCCGTT (3) 3.9 0.0039 P0.5 retina TTTTTAAAAT (7) 3.9 0.0039 P2.5 retina TGATGCCAAT (2) 5.3 0.0053 P2.5 retina TGTAAAGGAG 5.3 0.0053 P2.5 retina ACCAAGAGTC (2) 3.5 0.0035 P2.5 retina CTGCTCCGTT (3) 1.8 0.0018 P2.5 retina TTTTTAAAAT (7) 1.8 0.0018 P4.5 retina TTTTTAAAAT (7) 7.9 0.0079 P4.5 retina CTGCTCCGTT (3) 5.9 0.0059 P4.5 retina TGATGCCAAT (2) 4 0.004 P4.5 retina TGTAAAGGAG 4 0.004 P4.5 retina CTTTTTTTCT (9) 2 0.002 P4.5 retina GTAGAGAACT (2) 2 0.002 P4.5 retina GTGGCCGCAA (3) 2 0.002 P6.5 retina CTGCTCCGTT (3) 16.7 0.0167 P6.5 retina TGTAAAGGAG 11.7 0.0117 P6.5 retina TTTTTAAAAT (7) 5 0.005 P6.5 retina GTAGAGAACT (2) 3.3 0.0033 P6.5 retina GTGGCCGCAA (3) 3.3 0.0033 P6.5 retina TGATCTTTTT (2) 3.3 0.0033 P6.5 retina TGATGCCAAT (2) 3.3 0.0033 P6.5 retina CCAGATGAAG (4) 1.7 0.0017 P6.5 retina CTCTTGTTTC 1.7 0.0017 P6.5 retina CTTTTTTTCT (9) 1.7 0.0017 P10.5 crx- retina CTGCTCCGTT (3) 18.6 0.0186 P10.5 crx- retina TGTAAAGGAG 16.7 0.0167 P10.5 crx- retina ACCAAGAGTC (2) 7.4 0.0074 P10.5 crx- retina CTTTTTTTCT (9) 7.4 0.0074 P10.5 crx- retina TGATGCCAAT (2) 3.7 0.0037 P10.5 crx- retina TTTTTAAAAT (7) 1.9 0.0019 P10.5 crx+ retina CTGCTCCGTT (3) 15.4 0.0154 P10.5 crx+ retina GTGGCCGCAA (3) 5.8 0.0058 P10.5 crx+ retina TGATGCCAAT (2) 5.8 0.0058 P10.5 crx+ retina TGTAAAGGAG 5.8 0.0058 P10.5 crx+ retina ACCAAGAGTC (2) 3.8 0.0038 P10.5 crx+ retina TTTTTAAAAT (7) 3.8 0.0038 P10.5 crx+ retina GCGCTCTTCA 1.9 0.0019 Adult retinal TGTAAAGGAG 13 0.013 Adult retinal CTGCTCCGTT (3) 11.1 0.0111 Adult retinal TGATCTTTTT (2) 3.7 0.0037 Adult retinal ACCAAGAGTC (2) 1.9 0.0019 Adult retinal TGATGCCAAT (2) 1.9 0.0019 ONL AGCGGGGGCA (3) 7.7 0.0077 ONL TGTAAAGGAG 5.7 0.0057 ONL TTTTTAAAAT (7) 5.7 0.0057 ONL CTGCTCCGTT (3) 3.8 0.0038 ONL CTCTTGTTTC 1.9 0.0019 ONL GTAGAGAACT (2) 1.9 0.0019