Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.641	Atf4	activating transcription factor 4	15	15 43.3 cM	11911
Gene Ontology	DNA binding | gluconeogenesis | nucleus | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | specific RNA polymerase II transcription factor activity | transcription factor complex | transcriptional activator activity
Human Homolog	ATF4[activating transcription factor 4 (tax-responsive enhancer element B67)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 50 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTAAAGGAG 9.8 0.0098 P8 Cb GC TGATGCCAAT (2) 8.2 0.0082 P8 Cb GC GCGTATTAGA 4.9 0.0049 P8 Cb GC ACCAAGAGTC (2) 1.6 0.0016 Cb medulloblastoma TGTAAAGGAG 6.9 0.0069 Cb medulloblastoma ACCAAGAGTC (2) 4.6 0.0046 Cb medulloblastoma GCGCTCTTCA 4.6 0.0046 Cb medulloblastoma TGATGCCAAT (2) 4.6 0.0046 P8 GC+1d culture TGTAAAGGAG 17.1 0.0171 P8 GC+1d culture TGATGCCAAT (2) 12.6 0.0126 P8 GC+1d culture ACCAAGAGTC (2) 4.6 0.0046 P8 GC+SHH+1d culture TGATGCCAAT (2) 8.2 0.0082 P8 GC+SHH+1d culture TGTAAAGGAG 7 0.007 P8 GC+SHH+1d culture ACCAAGAGTC (2) 1.2 0.0012 3T3 fibroblasts TGTAAAGGAG 21 0.021 E15 cortex TGATGCCAAT (2) 4.9 0.0049 E15 cortex TGTAAAGGAG 4.9 0.0049 P1 cortex TGTAAAGGAG 9.1 0.0091 Hypothalamus TGTAAAGGAG 5.4 0.0054 E12.5 retina TGATGCCAAT (2) 9.4 0.0094 E12.5 retina TGTAAAGGAG 3.8 0.0038 E12.5 retina ACCAAGAGTC (2) 1.9 0.0019 E14.5 retina ACCAAGAGTC (2) 1.8 0.0018 E14.5 retina TGATGCCAAT (2) 1.8 0.0018 E16.5 retina TGATGCCAAT (2) 3.6 0.0036 E16.5 retina TGTAAAGGAG 1.8 0.0018 E18.5 retina TGTAAAGGAG 5.5 0.0055 E18.5 retina TGATGCCAAT (2) 3.6 0.0036 P0.5 retina TGATGCCAAT (2) 5.9 0.0059 P0.5 retina TGTAAAGGAG 5.9 0.0059 P2.5 retina TGATGCCAAT (2) 5.3 0.0053 P2.5 retina TGTAAAGGAG 5.3 0.0053 P2.5 retina ACCAAGAGTC (2) 3.5 0.0035 P4.5 retina TGATGCCAAT (2) 4 0.004 P4.5 retina TGTAAAGGAG 4 0.004 P6.5 retina TGTAAAGGAG 11.7 0.0117 P6.5 retina TGATCTTTTT 3.3 0.0033 P6.5 retina TGATGCCAAT (2) 3.3 0.0033 P10.5 crx- retina TGTAAAGGAG 16.7 0.0167 P10.5 crx- retina ACCAAGAGTC (2) 7.4 0.0074 P10.5 crx- retina TGATGCCAAT (2) 3.7 0.0037 P10.5 crx+ retina TGATGCCAAT (2) 5.8 0.0058 P10.5 crx+ retina TGTAAAGGAG 5.8 0.0058 P10.5 crx+ retina ACCAAGAGTC (2) 3.8 0.0038 P10.5 crx+ retina GCGCTCTTCA 1.9 0.0019 Adult retinal TGTAAAGGAG 13 0.013 Adult retinal TGATCTTTTT 3.7 0.0037 Adult retinal ACCAAGAGTC (2) 1.9 0.0019 Adult retinal TGATGCCAAT (2) 1.9 0.0019 ONL TGTAAAGGAG 5.7 0.0057