Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.6478
Phr1
pam, highwire, rpm 1
14
14 54.58 cM
105689
Mm.6478
1700087I21Rik
RIKEN cDNA 1700087I21 gene
14
76619
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 99 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAGGTGGAAG (
5
)
94.6
0.0946
P8 Cb GC
TCAATAAAGC
(
3
)
6.5
0.0065
P8 Cb GC
CAGTCCAGAT (
4
)
3.3
0.0033
P8 Cb GC
GAGGACTTTG (
9
)
3.3
0.0033
P8 Cb GC
ATGCTGGTAG
(
2
)
1.6
0.0016
P8 Cb GC
TCGGCCGCCC (
15
)
1.6
0.0016
Cb medulloblastoma
AAGGTGGAAG (
5
)
27.7
0.0277
Cb medulloblastoma
TCAATAAAGC
(
3
)
11.6
0.0116
Cb medulloblastoma
GAGCATCACT (
4
)
2.3
0.0023
Cb medulloblastoma
TGGACAACTC
(
4
)
2.3
0.0023
P8 GC+1d culture
AAGGTGGAAG (
5
)
97
0.097
P8 GC+1d culture
TCAATAAAGC
(
3
)
14.8
0.0148
P8 GC+1d culture
CAGTCCAGAT (
4
)
11.4
0.0114
P8 GC+1d culture
TACATTCCAA
(
4
)
2.3
0.0023
P8 GC+1d culture
GAGCATCACT (
4
)
1.1
0.0011
P8 GC+1d culture
GAGGACTTTG (
9
)
1.1
0.0011
P8 GC+SHH+1d culture
AAGGTGGAAG (
5
)
92.5
0.0925
P8 GC+SHH+1d culture
TCAATAAAGC
(
3
)
11.7
0.0117
P8 GC+SHH+1d culture
CAGTCCAGAT (
4
)
5.9
0.0059
P8 GC+SHH+1d culture
GAGGACTTTG (
9
)
3.5
0.0035
P8 GC+SHH+1d culture
GACTGAGAAG
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TCGGCCGCCC (
15
)
2.3
0.0023
3T3 fibroblasts
AAGGTGGAAG (
5
)
101.6
0.1016
3T3 fibroblasts
CAGTCCAGAT (
4
)
24.5
0.0245
E15 cortex
AAGGTGGAAG (
5
)
39.6
0.0396
E15 cortex
TCAATAAAGC
(
3
)
9.9
0.0099
E15 cortex
CAGTCCAGAT (
4
)
4.9
0.0049
E15 cortex
GAGGACTTTG (
9
)
4.9
0.0049
P1 cortex
TCAATAAAGC
(
3
)
45.5
0.0455
P1 cortex
AAGGTGGAAG (
5
)
31.8
0.0318
P1 cortex
CATCACACAA
(
4
)
4.5
0.0045
P1 cortex
GAGCATCACT (
4
)
4.5
0.0045
P1 cortex
GAGGACTTTG (
9
)
4.5
0.0045
P1 cortex
TACATTCCAA
(
4
)
4.5
0.0045
Hypothalamus
TCAATAAAGC
(
3
)
29
0.029
Hypothalamus
AAGGTGGAAG (
5
)
23.5
0.0235
Hypothalamus
AAGCTGACTG (
5
)
1.8
0.0018
Hypothalamus
TCTTGGTTTT
(
3
)
1.8
0.0018
E12.5 retina
AAGGTGGAAG (
5
)
200.9
0.2009
E12.5 retina
TCAATAAAGC
(
3
)
7.5
0.0075
E12.5 retina
CAGTCCAGAT (
4
)
1.9
0.0019
E12.5 retina
GAGCATCACT (
4
)
1.9
0.0019
E14.5 retina
AAGGTGGAAG (
5
)
63.8
0.0638
E14.5 retina
TCAATAAAGC
(
3
)
12.8
0.0128
E14.5 retina
CAGTCCAGAT (
4
)
10.9
0.0109
E14.5 retina
TCGGCCGCCC (
15
)
3.6
0.0036
E14.5 retina
ATGCTGGTAG
(
2
)
1.8
0.0018
E14.5 retina
CATCACACAA
(
4
)
1.8
0.0018
E14.5 retina
GAGGACTTTG (
9
)
1.8
0.0018
E16.5 retina
AAGGTGGAAG (
5
)
108.7
0.1087
E16.5 retina
TCAATAAAGC
(
3
)
19.9
0.0199
E16.5 retina
CAGTCCAGAT (
4
)
12.7
0.0127
E16.5 retina
AAGCTGACTG (
5
)
1.8
0.0018
E16.5 retina
GAGCATCACT (
4
)
1.8
0.0018
E16.5 retina
TGGACAACTC
(
4
)
1.8
0.0018
E18.5 retina
AAGGTGGAAG (
5
)
47.3
0.0473
E18.5 retina
TCAATAAAGC
(
3
)
18.2
0.0182
E18.5 retina
CAGTCCAGAT (
4
)
5.5
0.0055
E18.5 retina
TGGACAACTC
(
4
)
1.8
0.0018
P0.5 retina
AAGGTGGAAG (
5
)
96.2
0.0962
P0.5 retina
TCAATAAAGC
(
3
)
17.7
0.0177
P0.5 retina
CAGTCCAGAT (
4
)
5.9
0.0059
P0.5 retina
CATCACACAA
(
4
)
2
0.002
P0.5 retina
GAGGACTTTG (
9
)
2
0.002
P2.5 retina
AAGGTGGAAG (
5
)
58.1
0.0581
P2.5 retina
TCAATAAAGC
(
3
)
26.4
0.0264
P2.5 retina
CAGTCCAGAT (
4
)
3.5
0.0035
P2.5 retina
GACTGAGAAG
(
3
)
1.8
0.0018
P2.5 retina
TACATTCCAA
(
4
)
1.8
0.0018
P2.5 retina
TCTTGGTTTT
(
3
)
1.8
0.0018
P4.5 retina
AAGGTGGAAG (
5
)
43.6
0.0436
P4.5 retina
TCAATAAAGC
(
3
)
13.9
0.0139
P4.5 retina
CATCACACAA
(
4
)
2
0.002
P4.5 retina
GAGGACTTTG (
9
)
2
0.002
P4.5 retina
TCTTGGTTTT
(
3
)
2
0.002
P6.5 retina
AAGGTGGAAG (
5
)
48.4
0.0484
P6.5 retina
TCAATAAAGC
(
3
)
21.7
0.0217
P6.5 retina
TCGGCCGCCC (
15
)
1.7
0.0017
P10.5 crx- retina
AAGGTGGAAG (
5
)
157.9
0.1579
P10.5 crx- retina
TCAATAAAGC
(
3
)
18.6
0.0186
P10.5 crx- retina
CAGTCCAGAT (
4
)
5.6
0.0056
P10.5 crx- retina
GAGGACTTTG (
9
)
3.7
0.0037
P10.5 crx- retina
TCTTGGTTTT
(
3
)
3.7
0.0037
P10.5 crx- retina
CATCACACAA
(
4
)
1.9
0.0019
P10.5 crx+ retina
AAGGTGGAAG (
5
)
57.7
0.0577
P10.5 crx+ retina
TCAATAAAGC
(
3
)
25
0.025
P10.5 crx+ retina
TCTTGGTTTT
(
3
)
5.8
0.0058
P10.5 crx+ retina
CAGTCCAGAT (
4
)
1.9
0.0019
P10.5 crx+ retina
GAGGACTTTG (
9
)
1.9
0.0019
Adult retinal
AAGGTGGAAG (
5
)
18.5
0.0185
Adult retinal
TCAATAAAGC
(
3
)
13
0.013
Adult retinal
GAGGACTTTG (
9
)
3.7
0.0037
Adult retinal
ATGCTGGTAG
(
2
)
1.9
0.0019
Adult retinal
CATCACACAA
(
4
)
1.9
0.0019
Adult retinal
TACATTCCAA
(
4
)
1.9
0.0019
ONL
AAGGTGGAAG (
5
)
49.8
0.0498
ONL
GAGGACTTTG (
9
)
5.7
0.0057
ONL
TCAATAAAGC
(
3
)
5.7
0.0057
ONL
AAGCTGACTG (
5
)
1.9
0.0019
