Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.66	Rps4x	ribosomal protein S4, X-linked	X	X 39.0 cM	20102
Gene Ontology	cell proliferation | cytosolic ribosome (sensu Eukarya) | cytosolic small ribosomal subunit (sensu Eukarya) | development | intracellular | protein biosynthesis | regulation of cell cycle | ribosome | ribosome biogenesis | RNA binding | structural constituent of ribosome
Human Homolog	RPS4X[ribosomal protein S4, X-linked]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 322 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGAAACTAA (5) 244.7 0.2447 P8 Cb GC TGAAAAAAAA (81) 27.7 0.0277 P8 Cb GC GTGAAACTAC (3) 16.3 0.0163 P8 Cb GC CCCAGGGCAC (5) 4.9 0.0049 P8 Cb GC CCCTGTGCTT (4) 4.9 0.0049 P8 Cb GC GTGAAAAAAA (22) 4.9 0.0049 P8 Cb GC ATGCTCCTCC (5) 3.3 0.0033 P8 Cb GC GGGAACCCCC (6) 3.3 0.0033 P8 Cb GC CAAGGTGAAC (5) 1.6 0.0016 P8 Cb GC GTAAACTAAA (5) 1.6 0.0016 P8 Cb GC GTCTCTCTTC (3) 1.6 0.0016 P8 Cb GC GTGAAACCAA (4) 1.6 0.0016 P8 Cb GC GTGAAACTGA (2) 1.6 0.0016 P8 Cb GC GTGAAGCTAA (3) 1.6 0.0016 P8 Cb GC GTTTGTTACC (3) 1.6 0.0016 P8 Cb GC GTTTTTTTTT (16) 1.6 0.0016 P8 Cb GC TACAAGTTGT 1.6 0.0016 P8 Cb GC TCTCCTAGAG (3) 1.6 0.0016 P8 Cb GC TTGAAACTAA (6) 1.6 0.0016 P8 Cb GC TTTGACACTG (3) 1.6 0.0016 Cb medulloblastoma TGAAAAAAAA (81) 78.6 0.0786 Cb medulloblastoma GTGAAACTAA (5) 71.7 0.0717 Cb medulloblastoma GTGAAAAAAA (22) 43.9 0.0439 Cb medulloblastoma GTGAAACTAC (3) 6.9 0.0069 Cb medulloblastoma ATGCTCCTCC (5) 4.6 0.0046 Cb medulloblastoma GGGAACCCCC (6) 4.6 0.0046 Cb medulloblastoma GTTTTTTTTT (16) 4.6 0.0046 Cb medulloblastoma GCTGGAAAAA (11) 2.3 0.0023 Cb medulloblastoma GTGAAATAAA (2) 2.3 0.0023 Cb medulloblastoma GTGTAACTAA (2) 2.3 0.0023 Cb medulloblastoma TGAACTAAAA (3) 2.3 0.0023 Cb medulloblastoma TGAAGATGCC (3) 2.3 0.0023 P8 GC+1d culture GTGAAACTAA (5) 153 0.153 P8 GC+1d culture TGAAAAAAAA (81) 26.3 0.0263 P8 GC+1d culture GGGAACCCCC (6) 8 0.008 P8 GC+1d culture GTGAAAAAAA (22) 6.8 0.0068 P8 GC+1d culture CAAGGTGAAC (5) 5.7 0.0057 P8 GC+1d culture GTGAAACTAC (3) 5.7 0.0057 P8 GC+1d culture ATGCTCCTCC (5) 3.4 0.0034 P8 GC+1d culture TACAAGTTGT 3.4 0.0034 P8 GC+1d culture CTGAGAGAGA (3) 2.3 0.0023 P8 GC+1d culture GTAAACTAAA (5) 2.3 0.0023 P8 GC+1d culture GTGAAACCAA (4) 2.3 0.0023 P8 GC+1d culture GTGGAACTAA 2.3 0.0023 P8 GC+1d culture TCTCCTAGAG (3) 2.3 0.0023 P8 GC+1d culture TGAAGATGCC (3) 2.3 0.0023 P8 GC+1d culture CTGGAAAAGT 1.1 0.0011 P8 GC+1d culture GCTGCGCTAG 1.1 0.0011 P8 GC+1d culture GCTGGAAAAA (11) 1.1 0.0011 P8 GC+1d culture GTGAAACTAG 1.1 0.0011 P8 GC+1d culture GTGAAACTGA (2) 1.1 0.0011 P8 GC+1d culture GTTTTTTTTT (16) 1.1 0.0011 P8 GC+1d culture TGAACTAAAA (3) 1.1 0.0011 P8 GC+1d culture TGGACAAGTG (2) 1.1 0.0011 P8 GC+1d culture TTGAAACTAA (6) 1.1 0.0011 P8 GC+SHH+1d culture GTGAAACTAA (5) 240 0.24 P8 GC+SHH+1d culture TGAAAAAAAA (81) 57.4 0.0574 P8 GC+SHH+1d culture GTGAAACTAC (3) 19.9 0.0199 P8 GC+SHH+1d culture GGGAACCCCC (6) 11.7 0.0117 P8 GC+SHH+1d culture GTGAAAAAAA (22) 10.5 0.0105 P8 GC+SHH+1d culture ATGCTCCTCC (5) 5.9 0.0059 P8 GC+SHH+1d culture CTGAGAGAGA (3) 5.9 0.0059 P8 GC+SHH+1d culture GTGAAGCTAA (3) 4.7 0.0047 P8 GC+SHH+1d culture CAAGGTGAAC (5) 3.5 0.0035 P8 GC+SHH+1d culture GTCTCTCTTC (3) 3.5 0.0035 P8 GC+SHH+1d culture TGAAGATGCC (3) 3.5 0.0035 P8 GC+SHH+1d culture CCCAGGGCAC (5) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCGCTAG 2.3 0.0023 P8 GC+SHH+1d culture GTGGAACTAA 2.3 0.0023 P8 GC+SHH+1d culture GTTTGTTACC (3) 2.3 0.0023 P8 GC+SHH+1d culture TACAAGTTGT 2.3 0.0023 P8 GC+SHH+1d culture TCTCCTAGAG (3) 2.3 0.0023 P8 GC+SHH+1d culture AACCACATCA 1.2 0.0012 P8 GC+SHH+1d culture GTAAACTAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture GTGAAACCAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GTGTAACTAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTTTTTTTT (16) 1.2 0.0012 P8 GC+SHH+1d culture TGAACTAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TTGAAACTAA (6) 1.2 0.0012 3T3 fibroblasts CTGAGAGAGA (3) 17.5 0.0175 3T3 fibroblasts GTGAAACTAA (5) 17.5 0.0175 3T3 fibroblasts CAAGGTGAAC (5) 10.5 0.0105 3T3 fibroblasts TGAAAAAAAA (81) 7 0.007 3T3 fibroblasts CCCAGGGCAC (5) 3.5 0.0035 E15 cortex GTGAAACTAA (5) 148.4 0.1484 E15 cortex TGAAAAAAAA (81) 29.7 0.0297 E15 cortex GGGAACCCCC (6) 14.8 0.0148 E15 cortex CAAGGTGAAC (5) 9.9 0.0099 E15 cortex CCCAGGGCAC (5) 4.9 0.0049 E15 cortex CTGGAAAAAA (10) 4.9 0.0049 P1 cortex GTGAAACTAA (5) 54.5 0.0545 P1 cortex CAAGGTGAAC (5) 13.6 0.0136 P1 cortex GGGAACCCCC (6) 13.6 0.0136 P1 cortex GATTTTTTTT (15) 4.5 0.0045 P1 cortex GCTGCGCTAG 4.5 0.0045 P1 cortex GTGAAACTAC (3) 4.5 0.0045 P1 cortex GTGAAACTGA (2) 4.5 0.0045 P1 cortex TGAAAAAAAA (81) 4.5 0.0045 P1 cortex TGAACTAAAA (3) 4.5 0.0045 P1 cortex TGAAGATGCC (3) 4.5 0.0045 P1 cortex TTTGACACTG (3) 4.5 0.0045 Hypothalamus GTGAAACTAA (5) 105 0.105 Hypothalamus TGAAAAAAAA (81) 36.2 0.0362 Hypothalamus GTGAAAAAAA (22) 18.1 0.0181 Hypothalamus GTGAAACTAC (3) 10.9 0.0109 Hypothalamus CAAGGTGAAC (5) 7.2 0.0072 Hypothalamus GGGAACCCCC (6) 7.2 0.0072 Hypothalamus ATGCTCGTAC 3.6 0.0036 Hypothalamus CCCAGGGCAC (5) 3.6 0.0036 Hypothalamus CCCTGTGCTT (4) 3.6 0.0036 Hypothalamus GCTGCGCTAG 3.6 0.0036 Hypothalamus TTTGACACTG (3) 3.6 0.0036 Hypothalamus ATGCTCCTCC (5) 1.8 0.0018 Hypothalamus CAGCGATTCA (3) 1.8 0.0018 Hypothalamus CTGAGAGAGA (3) 1.8 0.0018 Hypothalamus GCTGGAAAAA (11) 1.8 0.0018 Hypothalamus GTCTCTCTTC (3) 1.8 0.0018 Hypothalamus GTTTGTTACC (3) 1.8 0.0018 Hypothalamus TGAAAGATGC (2) 1.8 0.0018 Hypothalamus TGCATACATA (14) 1.8 0.0018 E12.5 retina GTGAAACTAA (5) 478.7 0.4787 E12.5 retina TGAAAAAAAA (81) 31.9 0.0319 E12.5 retina GTGAAACTAC (3) 24.4 0.0244 E12.5 retina GTGAAAAAAA (22) 11.3 0.0113 E12.5 retina CAAGGTGAAC (5) 9.4 0.0094 E12.5 retina GGGAACCCCC (6) 7.5 0.0075 E12.5 retina ATGCTCCTCC (5) 5.6 0.0056 E12.5 retina AACCACATCA 3.8 0.0038 E12.5 retina GTGAGACTAA 3.8 0.0038 E12.5 retina GTTTGTTACC (3) 3.8 0.0038 E12.5 retina CTGGAAAAAA (10) 1.9 0.0019 E12.5 retina GCTGCGCTAG 1.9 0.0019 E12.5 retina GTGAAACTAG 1.9 0.0019 E12.5 retina GTGAAATAAA (2) 1.9 0.0019 E12.5 retina GTGAAGCTAA (3) 1.9 0.0019 E12.5 retina GTGTAACTAA (2) 1.9 0.0019 E12.5 retina TGAAAGATGC (2) 1.9 0.0019 E12.5 retina TGAAGATGCC (3) 1.9 0.0019 E14.5 retina GTGAAACTAA (5) 269.7 0.2697 E14.5 retina TGAAAAAAAA (81) 49.2 0.0492 E14.5 retina TCTCCTAGAG (3) 14.6 0.0146 E14.5 retina GTGAAAAAAA (22) 12.8 0.0128 E14.5 retina GTGAAACTAC (3) 12.8 0.0128 E14.5 retina AACCACATCA 9.1 0.0091 E14.5 retina ATGCTCCTCC (5) 5.5 0.0055 E14.5 retina GCTGCGCTAG 3.6 0.0036 E14.5 retina GTGAAATAAA (2) 3.6 0.0036 E14.5 retina TACAAGTTGT 3.6 0.0036 E14.5 retina CCCAGGGCAC (5) 1.8 0.0018 E14.5 retina CTGGAAAAGT 1.8 0.0018 E14.5 retina GGGAACCCCC (6) 1.8 0.0018 E14.5 retina GGTGAAAACT (4) 1.8 0.0018 E14.5 retina GTGAAATTAA (2) 1.8 0.0018 E14.5 retina GTGAAGCTAA (3) 1.8 0.0018 E14.5 retina GTGAGAGAGA 1.8 0.0018 E14.5 retina GTTTGTTACC (3) 1.8 0.0018 E14.5 retina GTTTTTTTTT (16) 1.8 0.0018 E14.5 retina TGAAAGATGC (2) 1.8 0.0018 E14.5 retina TGAAGATGCC (3) 1.8 0.0018 E16.5 retina GTGAAACTAA (5) 182.9 0.1829 E16.5 retina TCTCCTAGAG (3) 16.3 0.0163 E16.5 retina TGAAAAAAAA (81) 16.3 0.0163 E16.5 retina ATGCTCCTCC (5) 14.5 0.0145 E16.5 retina GTGAAACTAC (3) 14.5 0.0145 E16.5 retina GTGAAATTAA (2) 9.1 0.0091 E16.5 retina AACCACATCA 7.2 0.0072 E16.5 retina ATGCTCGTAC 5.4 0.0054 E16.5 retina GTGAAAAAAA (22) 5.4 0.0054 E16.5 retina TGAAAGATGC (2) 5.4 0.0054 E16.5 retina GTTTGTTACC (3) 3.6 0.0036 E16.5 retina TACAAGTTGT 3.6 0.0036 E16.5 retina CAAGGTGAAC (5) 1.8 0.0018 E16.5 retina CAGCGATTCA (3) 1.8 0.0018 E16.5 retina GGGAACCCCC (6) 1.8 0.0018 E16.5 retina GGTGAAAACT (4) 1.8 0.0018 E16.5 retina GTCTCTCTTC (3) 1.8 0.0018 E16.5 retina GTGGAACTAA 1.8 0.0018 E16.5 retina TGAAGATGCC (3) 1.8 0.0018 E18.5 retina GTGAAACTAA (5) 611.2 0.6112 E18.5 retina TGAAAAAAAA (81) 74.6 0.0746 E18.5 retina GTGAAACTAC (3) 43.7 0.0437 E18.5 retina GTGAAAAAAA (22) 20 0.02 E18.5 retina GTGAAACTAG 5.5 0.0055 E18.5 retina GTGAAATTAA (2) 5.5 0.0055 E18.5 retina CAAGGTGAAC (5) 3.6 0.0036 E18.5 retina GGGAACCCCC (6) 3.6 0.0036 E18.5 retina TACAAGTTGT 3.6 0.0036 E18.5 retina TCTCCTAGAG (3) 3.6 0.0036 E18.5 retina ATGCTCCTCC (5) 1.8 0.0018 E18.5 retina CAGCGATTCA (3) 1.8 0.0018 E18.5 retina CTGGAAAAAA (10) 1.8 0.0018 E18.5 retina CTGGAAAAGT 1.8 0.0018 E18.5 retina GTCTCTCTTC (3) 1.8 0.0018 E18.5 retina GTGAGACTAA 1.8 0.0018 E18.5 retina GTGGAACTAA 1.8 0.0018 E18.5 retina GTTTTTTTTT (16) 1.8 0.0018 E18.5 retina TGAACTAAAA (3) 1.8 0.0018 E18.5 retina TGCATACATA (14) 1.8 0.0018 E18.5 retina TTGAAACTAA (6) 1.8 0.0018 P0.5 retina GTGAAACTAA (5) 162.9 0.1629 P0.5 retina TGAAAAAAAA (81) 15.7 0.0157 P0.5 retina ATGCTCCTCC (5) 7.9 0.0079 P0.5 retina GGGAACCCCC (6) 7.9 0.0079 P0.5 retina GTGAAAAAAA (22) 7.9 0.0079 P0.5 retina CAAGGTGAAC (5) 5.9 0.0059 P0.5 retina GTGAAACTAC (3) 5.9 0.0059 P0.5 retina GTGAGACTAA 5.9 0.0059 P0.5 retina TGAAGATGCC (3) 3.9 0.0039 P0.5 retina ATGCTCGTAC 2 0.002 P0.5 retina CCCTGTGCTT (4) 2 0.002 P0.5 retina CTGGAAAAAA (10) 2 0.002 P0.5 retina GCTGGAAAAA (11) 2 0.002 P0.5 retina GTGAAGCTAA (3) 2 0.002 P0.5 retina GTGGAACTAA 2 0.002 P0.5 retina GTGTAACTAA (2) 2 0.002 P0.5 retina GTTTGTTACC (3) 2 0.002 P0.5 retina GTTTTTTTTT (16) 2 0.002 P0.5 retina TACAAGTTGT 2 0.002 P0.5 retina TCTCCTAGAG (3) 2 0.002 P0.5 retina TGCATACATA (14) 2 0.002 P2.5 retina GTGAAACTAA (5) 225.2 0.2252 P2.5 retina TGAAAAAAAA (81) 42.2 0.0422 P2.5 retina GTGAAAAAAA (22) 10.6 0.0106 P2.5 retina CAAGGTGAAC (5) 7 0.007 P2.5 retina CCCTGTGCTT (4) 7 0.007 P2.5 retina ATGCTCCTCC (5) 3.5 0.0035 P2.5 retina GTGAAACTAC (3) 3.5 0.0035 P2.5 retina GTGAAATTAA (2) 3.5 0.0035 P2.5 retina TGCATACATA (14) 3.5 0.0035 P2.5 retina TTGAAACTAA (6) 3.5 0.0035 P2.5 retina AACCACATCA 1.8 0.0018 P2.5 retina CAGCGATTCA (3) 1.8 0.0018 P2.5 retina CTGGAAAAGT 1.8 0.0018 P2.5 retina GGGAACCCCC (6) 1.8 0.0018 P2.5 retina GGTGAAAACT (4) 1.8 0.0018 P2.5 retina GTGGAACTAA 1.8 0.0018 P2.5 retina TCTCCTAGAG (3) 1.8 0.0018 P2.5 retina TGAAGATGCC (3) 1.8 0.0018 P4.5 retina GTGAAACTAA (5) 277.4 0.2774 P4.5 retina TGAAAAAAAA (81) 43.6 0.0436 P4.5 retina GTGAAAAAAA (22) 23.8 0.0238 P4.5 retina GGGAACCCCC (6) 11.9 0.0119 P4.5 retina CAAGGTGAAC (5) 9.9 0.0099 P4.5 retina GTGAAACTAC (3) 5.9 0.0059 P4.5 retina ATGCTCCTCC (5) 4 0.004 P4.5 retina GTGAAACCAA (4) 4 0.004 P4.5 retina GTGGAACTAA 4 0.004 P4.5 retina TACAAGTTGT 4 0.004 P4.5 retina CTGGAAAAAA (10) 2 0.002 P4.5 retina GCTGGAAAAA (11) 2 0.002 P4.5 retina GTGAAATAAA (2) 2 0.002 P4.5 retina GTGAAATTAA (2) 2 0.002 P4.5 retina GTTTTTTTTT (16) 2 0.002 P4.5 retina TCTCCTAGAG (3) 2 0.002 P4.5 retina TGCATACATA (14) 2 0.002 P4.5 retina TTGAAACTAA (6) 2 0.002 P6.5 retina GTGAAACTAA (5) 120 0.12 P6.5 retina TGAAAAAAAA (81) 33.3 0.0333 P6.5 retina GTGAAACTAC (3) 11.7 0.0117 P6.5 retina ATGCTCCTCC (5) 8.3 0.0083 P6.5 retina GGGAACCCCC (6) 6.7 0.0067 P6.5 retina GTGAAAAAAA (22) 5 0.005 P6.5 retina CAAGGTGAAC (5) 3.3 0.0033 P6.5 retina GCTGGAAAAA (11) 3.3 0.0033 P6.5 retina CAGCGATTCA (3) 1.7 0.0017 P6.5 retina GTCTCTCTTC (3) 1.7 0.0017 P6.5 retina GTGAAATTAA (2) 1.7 0.0017 P6.5 retina GTGAGACTAA 1.7 0.0017 P6.5 retina TCTCCTAGAG (3) 1.7 0.0017 P6.5 retina TGAAGATGCC (3) 1.7 0.0017 P6.5 retina TGCATACATA (14) 1.7 0.0017 P10.5 crx- retina GTGAAACTAA (5) 37.2 0.0372 P10.5 crx- retina TGAAAAAAAA (81) 9.3 0.0093 P10.5 crx- retina GGGAACCCCC (6) 7.4 0.0074 P10.5 crx- retina CAAGGTGAAC (5) 5.6 0.0056 P10.5 crx- retina GTGAAAAAAA (22) 3.7 0.0037 P10.5 crx- retina GTGAAACTAC (3) 3.7 0.0037 P10.5 crx- retina ATGCTCCTCC (5) 1.9 0.0019 P10.5 crx- retina GCTGGAAAAA (11) 1.9 0.0019 P10.5 crx- retina GTTTTTTTTT (16) 1.9 0.0019 P10.5 crx- retina TACAAGTTGT 1.9 0.0019 P10.5 crx- retina TCTCCATTTG (3) 1.9 0.0019 P10.5 crx- retina TCTCCTAGAG (3) 1.9 0.0019 P10.5 crx+ retina GTGAAACTAA (5) 113.4 0.1134 P10.5 crx+ retina TGAAAAAAAA (81) 19.2 0.0192 P10.5 crx+ retina GGGAACCCCC (6) 13.5 0.0135 P10.5 crx+ retina CAAGGTGAAC (5) 11.5 0.0115 P10.5 crx+ retina GCTGGAAAAA (11) 9.6 0.0096 P10.5 crx+ retina GTGAAACTAC (3) 9.6 0.0096 P10.5 crx+ retina ATGCTCCTCC (5) 5.8 0.0058 P10.5 crx+ retina GTGAAAAAAA (22) 5.8 0.0058 P10.5 crx+ retina GATTTTTTTT (15) 1.9 0.0019 P10.5 crx+ retina GTGAAACCAA (4) 1.9 0.0019 P10.5 crx+ retina GTTTTTTTTT (16) 1.9 0.0019 P10.5 crx+ retina TACAAGTTGT 1.9 0.0019 P10.5 crx+ retina TGAAGATGCC (3) 1.9 0.0019 P10.5 crx+ retina TGCATACATA (14) 1.9 0.0019 Adult retinal GTGAAACTAA (5) 53.7 0.0537 Adult retinal TCTCCATTTG (3) 14.8 0.0148 Adult retinal TGAAAAAAAA (81) 13 0.013 Adult retinal CAAGGTGAAC (5) 7.4 0.0074 Adult retinal GGGAACCCCC (6) 7.4 0.0074 Adult retinal GTGAAACTAC (3) 7.4 0.0074 Adult retinal TGAAGATGCC (3) 5.6 0.0056 Adult retinal GTGAAAAAAA (22) 3.7 0.0037 Adult retinal GCTGGAAAAA (11) 1.9 0.0019 Adult retinal GTGTAACTAA (2) 1.9 0.0019 Adult retinal TACAAGTTGT 1.9 0.0019 ONL GTGAAACTAA (5) 21.1 0.0211 ONL TGAAAAAAAA (81) 19.2 0.0192 ONL TCTCCATTTG (3) 7.7 0.0077 ONL CAAGGTGAAC (5) 5.7 0.0057 ONL GTGAAAAAAA (22) 5.7 0.0057 ONL ATGCTCCTCC (5) 3.8 0.0038 ONL GGGAACCCCC (6) 3.8 0.0038 ONL TGAAGATGCC (3) 3.8 0.0038 ONL AACCACATCA 1.9 0.0019 ONL CTGGAAAAAA (10) 1.9 0.0019 ONL GTGAAACTAC (3) 1.9 0.0019 ONL GTGAAATAAA (2) 1.9 0.0019 ONL GTGAGAGAGA 1.9 0.0019 ONL TACAAGTTGT 1.9 0.0019