Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.66	Rps4x	ribosomal protein S4, X-linked	X	X 39.0 cM	20102
Gene Ontology	cell proliferation | cytosolic ribosome (sensu Eukarya) | cytosolic small ribosomal subunit (sensu Eukarya) | development | intracellular | protein biosynthesis | regulation of cell cycle | ribosome | ribosome biogenesis | RNA binding | structural constituent of ribosome
Human Homolog	RPS4X[ribosomal protein S4, X-linked]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 322 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCTCCTCC (2) CAAGGTGAAC (2) CCCAGGGCAC (2) CCCTGTGCTT GGGAACCCCC GTAAACTAAA GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACCAA GTGAAACTAA GTGAAACTAC GTGAAACTGA GTGAAGCTAA (2) GTTTGTTACC GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TTGAAACTAA TTTGACACTG (2) 329.2 0.3292 Cb medulloblastoma ATGCTCCTCC (2) GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATAAA GTGTAACTAA GTTTTTTTTT (2) TGAAAAAAAA (2) TGAACTAAAA (2) TGAAGATGCC (2) 226.4 0.2264 P8 GC+1d culture ATGCTCCTCC (2) CAAGGTGAAC (2) CTGAGAGAGA CTGGAAAAGT GCTGCGCTAG GCTGGAAAAA (3) GGGAACCCCC GTAAACTAAA GTGAAAAAAA (2) GTGAAACCAA GTGAAACTAA GTGAAACTAC GTGAAACTAG GTGAAACTGA GTGGAACTAA GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAACTAAAA (2) TGAAGATGCC (2) TGGACAAGTG (2) TTGAAACTAA 236 0.236 P8 GC+SHH+1d culture AACCACATCA ATGCTCCTCC (2) CAAGGTGAAC (2) CCCAGGGCAC (2) CTGAGAGAGA GCTGCGCTAG GGGAACCCCC GTAAACTAAA GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACCAA GTGAAACTAA GTGAAACTAC GTGAAGCTAA (2) GTGGAACTAA GTGTAACTAA GTTTGTTACC GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAACTAAAA (2) TGAAGATGCC (2) TTGAAACTAA 388.7 0.3887 3T3 fibroblasts CAAGGTGAAC (2) CCCAGGGCAC (2) CTGAGAGAGA GTGAAACTAA TGAAAAAAAA (2) 56 0.056 E15 cortex CAAGGTGAAC (2) CCCAGGGCAC (2) CTGGAAAAAA GGGAACCCCC GTGAAACTAA TGAAAAAAAA (2) 212.6 0.2126 P1 cortex CAAGGTGAAC (2) GATTTTTTTT (3) GCTGCGCTAG GGGAACCCCC GTGAAACTAA GTGAAACTAC GTGAAACTGA TGAAAAAAAA (2) TGAACTAAAA (2) TGAAGATGCC (2) TTTGACACTG (2) 117.7 0.1177 Hypothalamus ATGCTCCTCC (2) ATGCTCGTAC CAAGGTGAAC (2) CAGCGATTCA CCCAGGGCAC (2) CCCTGTGCTT CTGAGAGAGA GCTGCGCTAG GCTGGAAAAA (3) GGGAACCCCC GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTTTGTTACC TGAAAAAAAA (2) TGAAAGATGC TGCATACATA TTTGACACTG (2) 217 0.217 E12.5 retina AACCACATCA ATGCTCCTCC (2) CAAGGTGAAC (2) CTGGAAAAAA GCTGCGCTAG GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAACTAG GTGAAATAAA GTGAAGCTAA (2) GTGAGACTAA GTGTAACTAA GTTTGTTACC TGAAAAAAAA (2) TGAAAGATGC TGAAGATGCC (2) 595.4 0.5954 E14.5 retina AACCACATCA ATGCTCCTCC (2) CCCAGGGCAC (2) CTGGAAAAGT GCTGCGCTAG GGGAACCCCC GGTGAAAACT GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATAAA GTGAAATTAA GTGAAGCTAA (2) GTGAGAGAGA GTTTGTTACC GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAAAGATGC TGAAGATGCC (2) 404.3 0.4043 E16.5 retina AACCACATCA ATGCTCCTCC (2) ATGCTCGTAC CAAGGTGAAC (2) CAGCGATTCA GGGAACCCCC GGTGAAAACT GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATTAA GTGGAACTAA GTTTGTTACC TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAAAGATGC TGAAGATGCC (2) 296.8 0.2968 E18.5 retina ATGCTCCTCC (2) CAAGGTGAAC (2) CAGCGATTCA CTGGAAAAAA CTGGAAAAGT GGGAACCCCC GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAACTAG GTGAAATTAA GTGAGACTAA GTGGAACTAA GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAACTAAAA (2) TGCATACATA TTGAAACTAA 794.7 0.7947 P0.5 retina ATGCTCCTCC (2) ATGCTCGTAC CAAGGTGAAC (2) CCCTGTGCTT CTGGAAAAAA GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAGCTAA (2) GTGAGACTAA GTGGAACTAA GTGTAACTAA GTTTGTTACC GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGAAGATGCC (2) TGCATACATA 247.9 0.2479 P2.5 retina AACCACATCA ATGCTCCTCC (2) CAAGGTGAAC (2) CAGCGATTCA CCCTGTGCTT CTGGAAAAGT GGGAACCCCC GGTGAAAACT GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATTAA GTGGAACTAA TCTCCTAGAG (2) TGAAAAAAAA (2) TGAAGATGCC (2) TGCATACATA TTGAAACTAA 323.9 0.3239 P4.5 retina ATGCTCCTCC (2) CAAGGTGAAC (2) CTGGAAAAAA GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACCAA GTGAAACTAA GTGAAACTAC GTGAAATAAA GTGAAATTAA GTGGAACTAA GTTTTTTTTT (2) TACAAGTTGT TCTCCTAGAG (2) TGAAAAAAAA (2) TGCATACATA TTGAAACTAA 404.5 0.4045 P6.5 retina ATGCTCCTCC (2) CAAGGTGAAC (2) CAGCGATTCA GCTGGAAAAA (3) GGGAACCCCC GTCTCTCTTC (2) GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATTAA GTGAGACTAA TCTCCTAGAG (2) TGAAAAAAAA (2) TGAAGATGCC (2) TGCATACATA 203.5 0.2035 P10.5 crx- retina ATGCTCCTCC (2) CAAGGTGAAC (2) GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTTTTTTTTT (2) TACAAGTTGT TCTCCATTTG (2) TCTCCTAGAG (2) TGAAAAAAAA (2) 78.3 0.0783 P10.5 crx+ retina ATGCTCCTCC (2) CAAGGTGAAC (2) GATTTTTTTT (3) GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACCAA GTGAAACTAA GTGAAACTAC GTTTTTTTTT (2) TACAAGTTGT TGAAAAAAAA (2) TGAAGATGCC (2) TGCATACATA 199.8 0.1998 Adult retinal CAAGGTGAAC (2) GCTGGAAAAA (3) GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGTAACTAA TACAAGTTGT TCTCCATTTG (2) TGAAAAAAAA (2) TGAAGATGCC (2) 118.7 0.1187 ONL AACCACATCA ATGCTCCTCC (2) CAAGGTGAAC (2) CTGGAAAAAA GGGAACCCCC GTGAAAAAAA (2) GTGAAACTAA GTGAAACTAC GTGAAATAAA GTGAGAGAGA TACAAGTTGT TCTCCATTTG (2) TGAAAAAAAA (2) TGAAGATGCC (2) 82.2 0.0822