Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.738	Col4a1	procollagen, type IV, alpha 1	8	8 5.0 cM	12826
Gene Ontology	basement membrane | cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL4A1[collagen, type IV, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGCTACTCC GTGTCTGATA (4) 8.2 0.0082 P8 GC+1d culture GATGTAGTGT GCTTTCCTGT GTGCTACTCC GTGTCTGATA (4) 14.7 0.0147 P8 GC+SHH+1d culture GATGTAGTGT GTGAAGGCGG GTGCTACTCC GTGTCTGATA (4) 8.2 0.0082 3T3 fibroblasts GTGCTACTCC GTGTCTGATA (4) 7 0.007 E15 cortex GTGAAGGCGG 14.8 0.0148 P1 cortex GTGTCTGATA (4) 22.7 0.0227 Hypothalamus GTGTCTGATA (4) 1.8 0.0018 E12.5 retina GATGTAGTGT GCAGGCATTT GTGTCTGATA (4) 5.7 0.0057 E14.5 retina GATGTAGTGT GCAGGCATTT GCTTTCCTGT GTGCTACTCC 7.2 0.0072 E16.5 retina GATGTAGTGT GCTTTCCTGT GTGTCTGATA (4) 5.4 0.0054 E18.5 retina GCTTTCCTGT GTGAAGGCGG GTGTCTGATA (4) 5.4 0.0054 P0.5 retina GTGTCTGATA (4) 7.9 0.0079 P2.5 retina GTGATGGCGG GTGCTACTCC 3.6 0.0036 P4.5 retina GTGTCTGATA (4) 2 0.002 P6.5 retina GTGCTACTCC GTGTCTGATA (4) 3.4 0.0034 P10.5 crx- retina GTGATGGCGG 1.9 0.0019 P10.5 crx+ retina GATGTAGTGT GCAGGCATTT 3.8 0.0038 Adult retinal GATGTAGTGT 3.7 0.0037 ONL GATGTAGTGT GTGATGGCGG 5.7 0.0057