Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.85410	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	9		20588
Gene Ontology	chromatin | chromatin assembly/disassembly | chromatin binding | DNA packaging | intracellular | nucleus | organogenesis | SWI/SNF complex
Human Homolog	SMARCC1[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAAAAAAAA (81) 27.7 0.0277 P8 Cb GC AAAATGAACC (3) 13.1 0.0131 P8 Cb GC AAGGCTCTGA (2) 4.9 0.0049 P8 Cb GC TGATGAGCAG 3.3 0.0033 P8 Cb GC ACTGTCAGTT (2) 1.6 0.0016 P8 Cb GC GAAGACCCCA (5) 1.6 0.0016 P8 Cb GC TCATTGAACG (3) 1.6 0.0016 Cb medulloblastoma TGAAAAAAAA (81) 78.6 0.0786 Cb medulloblastoma AAGGCTCTGA (2) 2.3 0.0023 Cb medulloblastoma GAAGACCCAA (6) 2.3 0.0023 Cb medulloblastoma GATTTCAAAG (4) 2.3 0.0023 P8 GC+1d culture TGAAAAAAAA (81) 26.3 0.0263 P8 GC+1d culture AAAATGAACC (3) 13.7 0.0137 P8 GC+1d culture GATTTCAAAG (4) 4.6 0.0046 P8 GC+1d culture AAGGCTCTGA (2) 1.1 0.0011 P8 GC+1d culture TCATTGAACG (3) 1.1 0.0011 P8 GC+1d culture TGATGAGCAG 1.1 0.0011 P8 GC+SHH+1d culture TGAAAAAAAA (81) 57.4 0.0574 P8 GC+SHH+1d culture AAAATGAACC (3) 5.9 0.0059 P8 GC+SHH+1d culture ATTAAACCTG (2) 3.5 0.0035 P8 GC+SHH+1d culture TGATGAGCAG 3.5 0.0035 P8 GC+SHH+1d culture ACTGTCAGTT (2) 2.3 0.0023 P8 GC+SHH+1d culture AAGGCTCTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAGACCCCA (5) 1.2 0.0012 3T3 fibroblasts TGATGAGCAG 21 0.021 3T3 fibroblasts TGAAAAAAAA (81) 7 0.007 3T3 fibroblasts AAAATGAACC (3) 3.5 0.0035 E15 cortex TGAAAAAAAA (81) 29.7 0.0297 E15 cortex ACTGTCAGTT (2) 4.9 0.0049 E15 cortex GAAGACCCCA (5) 4.9 0.0049 E15 cortex TGATGAGCAG 4.9 0.0049 P1 cortex ACTGTCAGTT (2) 13.6 0.0136 P1 cortex AAAATGAACC (3) 9.1 0.0091 P1 cortex ATTAAACCTG (2) 4.5 0.0045 P1 cortex TGAAAAAAAA (81) 4.5 0.0045 Hypothalamus TGAAAAAAAA (81) 36.2 0.0362 Hypothalamus AAAATGAACC (3) 10.9 0.0109 Hypothalamus ATTAAACCTG (2) 1.8 0.0018 E12.5 retina TGAAAAAAAA (81) 31.9 0.0319 E12.5 retina AAAATGAACC (3) 3.8 0.0038 E12.5 retina ATTAAACCTG (2) 1.9 0.0019 E12.5 retina GATTTCAAAG (4) 1.9 0.0019 E12.5 retina TGATGAGCAG 1.9 0.0019 E14.5 retina TGAAAAAAAA (81) 49.2 0.0492 E14.5 retina AAAATGAACC (3) 16.4 0.0164 E14.5 retina TGATGAGCAG 5.5 0.0055 E14.5 retina CAGATCTCTG (2) 3.6 0.0036 E14.5 retina AAGGCTCTGA (2) 1.8 0.0018 E14.5 retina ACTGTCAGTT (2) 1.8 0.0018 E14.5 retina GAAGACCCAA (6) 1.8 0.0018 E14.5 retina TCATTGAACG (3) 1.8 0.0018 E16.5 retina AAAATGAACC (3) 21.7 0.0217 E16.5 retina TGAAAAAAAA (81) 16.3 0.0163 E16.5 retina TGATGAGCAG 3.6 0.0036 E16.5 retina ATTAAACCTG (2) 1.8 0.0018 E18.5 retina TGAAAAAAAA (81) 74.6 0.0746 E18.5 retina AAAATGAACC (3) 9.1 0.0091 E18.5 retina AAGGCTCTGA (2) 1.8 0.0018 P0.5 retina TGAAAAAAAA (81) 15.7 0.0157 P0.5 retina AAAATGAACC (3) 7.9 0.0079 P0.5 retina ATTAAACCTG (2) 2 0.002 P2.5 retina TGAAAAAAAA (81) 42.2 0.0422 P2.5 retina AAAATGAACC (3) 12.3 0.0123 P2.5 retina GATTTCAAAG (4) 3.5 0.0035 P2.5 retina ATTAAACCTG (2) 1.8 0.0018 P2.5 retina TCATTGAACG (3) 1.8 0.0018 P4.5 retina TGAAAAAAAA (81) 43.6 0.0436 P4.5 retina AAAATGAACC (3) 5.9 0.0059 P4.5 retina ACTGTCAGTT (2) 4 0.004 P4.5 retina TCATTGAACG (3) 2 0.002 P6.5 retina TGAAAAAAAA (81) 33.3 0.0333 P6.5 retina AAAATGAACC (3) 10 0.01 P6.5 retina GATTTCAAAG (4) 3.3 0.0033 P6.5 retina AAGGCTCTGA (2) 1.7 0.0017 P6.5 retina TCATTGAACG (3) 1.7 0.0017 P6.5 retina TGATGAGCAG 1.7 0.0017 P10.5 crx- retina TGAAAAAAAA (81) 9.3 0.0093 P10.5 crx- retina AAAATGAACC (3) 1.9 0.0019 P10.5 crx- retina GATTTCAAAG (4) 1.9 0.0019 P10.5 crx+ retina TGAAAAAAAA (81) 19.2 0.0192 P10.5 crx+ retina ATTAAACCTG (2) 1.9 0.0019 P10.5 crx+ retina GAAGACCCAA (6) 1.9 0.0019 P10.5 crx+ retina TCATTGAACG (3) 1.9 0.0019 P10.5 crx+ retina TGATGAGCAG 1.9 0.0019 Adult retinal TGAAAAAAAA (81) 13 0.013 Adult retinal AAAATGAACC (3) 3.7 0.0037 Adult retinal GAAGACCCAA (6) 3.7 0.0037 Adult retinal ATTAAACCTG (2) 1.9 0.0019 Adult retinal GAAGACCCCA (5) 1.9 0.0019 ONL TGAAAAAAAA (81) 19.2 0.0192 ONL AAAATGAACC (3) 11.5 0.0115 ONL CAGATCTCTG (2) 3.8 0.0038