Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.930	Ctsl	cathepsin L	13	13 30.0 cM	13039
Gene Ontology	actinidain activity | cathepsin L activity | cysteine-type endopeptidase activity | cysteine-type peptidase activity | extracellular space | hydrolase activity | lysosome | peptidase activity | proteolysis and peptidolysis
Human Homolog	CTSL2[cathepsin L2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 93 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGTTAAATGT (3) 11.4 0.0114 P8 Cb GC GAGATGAACG (4) 1.6 0.0016 P8 Cb GC GGGCTCTTGT (3) 1.6 0.0016 P8 Cb GC TCGGCCGCCC (15) 1.6 0.0016 P8 Cb GC TGACTCCGGG (3) 1.6 0.0016 Cb medulloblastoma GGTTAAATGT (3) 9.2 0.0092 Cb medulloblastoma CCTGTCTCCC (5) 2.3 0.0023 Cb medulloblastoma TGACTCCGGG (3) 2.3 0.0023 Cb medulloblastoma TGTAATGAAA (4) 2.3 0.0023 P8 GC+1d culture GGTTAAATGT (3) 22.8 0.0228 P8 GC+1d culture CCTGTCTCCC (5) 1.1 0.0011 P8 GC+1d culture GGGGTTCTGT (3) 1.1 0.0011 P8 GC+1d culture GGGTTCTGTT (2) 1.1 0.0011 P8 GC+1d culture GTTTGACTCA (4) 1.1 0.0011 P8 GC+SHH+1d culture GGTTAAATGT (3) 8.2 0.0082 P8 GC+SHH+1d culture GGGCTCTTGT (3) 3.5 0.0035 P8 GC+SHH+1d culture GTTTGACTCA (4) 2.3 0.0023 P8 GC+SHH+1d culture TCGGCCGCCC (15) 2.3 0.0023 P8 GC+SHH+1d culture CCTGTCTCCC (5) 1.2 0.0012 P8 GC+SHH+1d culture GATTGTTCCT 1.2 0.0012 P8 GC+SHH+1d culture GGGTCTGTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGACTCCGGG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTAATGAAA (4) 1.2 0.0012 3T3 fibroblasts GGTTAAATGT (3) 17.5 0.0175 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CCTGTCTCCC (5) 3.5 0.0035 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex GTGGCTTCAC 4.9 0.0049 Hypothalamus GTGTTTCCTC (2) 3.6 0.0036 Hypothalamus GAGATGAACG (4) 1.8 0.0018 Hypothalamus GTTTGACTCA (4) 1.8 0.0018 Hypothalamus TGTAATGAAA (4) 1.8 0.0018 E12.5 retina GATTGTTCCT 1.9 0.0019 E12.5 retina GGGCTCTTGT (3) 1.9 0.0019 E12.5 retina GGGTTCTGTT (2) 1.9 0.0019 E12.5 retina GGTTAAATGT (3) 1.9 0.0019 E14.5 retina AAAGGCTTTG (5) 3.6 0.0036 E14.5 retina GGTTAAATGT (3) 3.6 0.0036 E14.5 retina TCGGCCGCCC (15) 3.6 0.0036 E14.5 retina GGGCTCTTGT (3) 1.8 0.0018 E14.5 retina GGGTCTGTGG (3) 1.8 0.0018 E14.5 retina GTGGCTTCAC 1.8 0.0018 E16.5 retina GGTTAAATGT (3) 5.4 0.0054 E16.5 retina ATTTGAATTC 3.6 0.0036 E16.5 retina AAAGGCTTTG (5) 1.8 0.0018 E16.5 retina GGGCTCTTGT (3) 1.8 0.0018 E16.5 retina GTGGCTTCAC 1.8 0.0018 E16.5 retina GTGGGACTCA (3) 1.8 0.0018 E18.5 retina GGTTAAATGT (3) 1.8 0.0018 E18.5 retina GTGTTTCCTC (2) 1.8 0.0018 E18.5 retina TCTGTGGACT (3) 1.8 0.0018 P0.5 retina GGTTAAATGT (3) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GATTGTTCCT 2 0.002 P0.5 retina GTGGCTTCAC 2 0.002 P0.5 retina GTTTGACTCA (4) 2 0.002 P0.5 retina TCTGTGGACT (3) 2 0.002 P2.5 retina GGTTAAATGT (3) 5.3 0.0053 P2.5 retina AAAGGCTTTG (5) 1.8 0.0018 P2.5 retina CCTGTCTCCC (5) 1.8 0.0018 P2.5 retina GGGGTTCTGT (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTGGCTTCAC 1.8 0.0018 P4.5 retina GGTTAAATGT (3) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GGTTAAATGT (3) 8.3 0.0083 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina ATTTGAATTC 1.7 0.0017 P6.5 retina CCTGTCTCCC (5) 1.7 0.0017 P6.5 retina GTGGGACTCA (3) 1.7 0.0017 P6.5 retina GTTTGACTCA (4) 1.7 0.0017 P6.5 retina TCGGCCGCCC (15) 1.7 0.0017 P10.5 crx- retina GGTTAAATGT (3) 18.6 0.0186 P10.5 crx- retina ATTTGAATTC 1.9 0.0019 P10.5 crx- retina CCTGTCTCCC (5) 1.9 0.0019 P10.5 crx- retina GAGATGAACG (4) 1.9 0.0019 P10.5 crx- retina GGGGTTCTGT (3) 1.9 0.0019 P10.5 crx- retina GGGTTCTGTT (2) 1.9 0.0019 P10.5 crx- retina GTGGCTTCAC 1.9 0.0019 P10.5 crx- retina GTGGGACTCA (3) 1.9 0.0019 P10.5 crx- retina GTGTTTCCTC (2) 1.9 0.0019 P10.5 crx- retina GTTTGACTCA (4) 1.9 0.0019 P10.5 crx+ retina GGTTAAATGT (3) 9.6 0.0096 P10.5 crx+ retina GGGTCTGTGG (3) 1.9 0.0019 P10.5 crx+ retina GTTTGACTCA (4) 1.9 0.0019 Adult retinal GGTTAAATGT (3) 5.6 0.0056 Adult retinal CCTGTCTCCC (5) 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTTTGACTCA (4) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GATTGTTCCT 1.9 0.0019 ONL GGTTAAATGT (3) 1.9 0.0019 ONL TCTGTGGACT (3) 1.9 0.0019